miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 4006 0.7 0.331189
Target:  5'- cGCGGggcgcCGGGCccGGCGCCcgCCUcucGCgGGGc -3'
miRNA:   3'- -CGCC-----GCCCG--CCGCGGuaGGA---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 4832 0.66 0.541082
Target:  5'- gGCgGGUGGGuCGGCcgGCCGUCaaaacGCaGGGg -3'
miRNA:   3'- -CG-CCGCCC-GCCG--CGGUAGga---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 5927 0.66 0.494629
Target:  5'- gGCGGaUGGGCGGCggacgacggGCCcgCCcGCUGc- -3'
miRNA:   3'- -CGCC-GCCCGCCG---------CGGuaGGaCGACcc -5'
6657 5' -64.2 NC_001847.1 + 8131 0.71 0.253921
Target:  5'- cGgGGCGGGCGG-GCCGacgagCCUcGCgGGGc -3'
miRNA:   3'- -CgCCGCCCGCCgCGGUa----GGA-CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 8136 0.71 0.259751
Target:  5'- aGgGGCGGGCGGUGCUgcgcgagggCUaGUUGGGa -3'
miRNA:   3'- -CgCCGCCCGCCGCGGua-------GGaCGACCC- -5'
6657 5' -64.2 NC_001847.1 + 8464 0.71 0.253921
Target:  5'- gGCGGCgccgggccggGGGCGGCGCUcggCCggggGCgGGGc -3'
miRNA:   3'- -CGCCG----------CCCGCCGCGGua-GGa---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 8595 0.67 0.458814
Target:  5'- -aGGCcccgccagGGGCGGCGCUcggCCggggGCgGGGg -3'
miRNA:   3'- cgCCG--------CCCGCCGCGGua-GGa---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 9522 0.67 0.450077
Target:  5'- cCGaGCGGGCGGCGCgcuagCGUCCgUGCg--- -3'
miRNA:   3'- cGC-CGCCCGCCGCG-----GUAGG-ACGaccc -5'
6657 5' -64.2 NC_001847.1 + 9929 0.68 0.424428
Target:  5'- cCGGCaGGCGGCuGCCAgCgU-CUGGGa -3'
miRNA:   3'- cGCCGcCCGCCG-CGGUaGgAcGACCC- -5'
6657 5' -64.2 NC_001847.1 + 10596 0.81 0.058219
Target:  5'- cGCGcGCGGGcCGGCGCCGgcccgcgcCCUGCUGGc -3'
miRNA:   3'- -CGC-CGCCC-GCCGCGGUa-------GGACGACCc -5'
6657 5' -64.2 NC_001847.1 + 10867 0.73 0.215071
Target:  5'- cGCGGCGGGCgcgGGCGCCcaggcagaccgCCUGC-GGc -3'
miRNA:   3'- -CGCCGCCCG---CCGCGGua---------GGACGaCCc -5'
6657 5' -64.2 NC_001847.1 + 11142 0.68 0.398865
Target:  5'- cGCGGCGGagcuGCGGCgGCUAaaCUaccggcgucgggaGCUGGGg -3'
miRNA:   3'- -CGCCGCC----CGCCG-CGGUagGA-------------CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 11327 0.67 0.450077
Target:  5'- cCGGCGGGCGGCuGgCG-CCggaGC-GGGa -3'
miRNA:   3'- cGCCGCCCGCCG-CgGUaGGa--CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 11664 0.67 0.473871
Target:  5'- uGCGGCGGccccagccgagcccGCGGCgGCCGUC--GCcGGGc -3'
miRNA:   3'- -CGCCGCC--------------CGCCG-CGGUAGgaCGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 11838 0.67 0.441431
Target:  5'- cUGGCGuaaGGCcucuGGCGCCGcCCUGC-GGGc -3'
miRNA:   3'- cGCCGC---CCG----CCGCGGUaGGACGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 12321 0.71 0.271739
Target:  5'- cCGGUGGGC-GCGCCcgCCggcucGCUGGu -3'
miRNA:   3'- cGCCGCCCGcCGCGGuaGGa----CGACCc -5'
6657 5' -64.2 NC_001847.1 + 12927 0.72 0.242583
Target:  5'- cGCGGgGGcGCGcGUGUCGUCgUGCggUGGGg -3'
miRNA:   3'- -CGCCgCC-CGC-CGCGGUAGgACG--ACCC- -5'
6657 5' -64.2 NC_001847.1 + 12957 0.66 0.513008
Target:  5'- gGCGGCGGGCcgGGgGUgGcCCggucGCUGGu -3'
miRNA:   3'- -CGCCGCCCG--CCgCGgUaGGa---CGACCc -5'
6657 5' -64.2 NC_001847.1 + 12960 0.68 0.432881
Target:  5'- gGCGGCGcgcgaugagcaGGCcauGGCGCUgcaGUaCCgGCUGGGg -3'
miRNA:   3'- -CGCCGC-----------CCG---CCGCGG---UA-GGaCGACCC- -5'
6657 5' -64.2 NC_001847.1 + 13123 0.82 0.051068
Target:  5'- gGCGcGCGGGCGGCGCCGcgccgCCUGCcgcggccggcgguUGGGc -3'
miRNA:   3'- -CGC-CGCCCGCCGCGGUa----GGACG-------------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.