miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6657 5' -64.2 NC_001847.1 + 15518 0.66 0.541082
Target:  5'- uGCGGCucGGCGGgaGCCGcgggCUGCUGGc -3'
miRNA:   3'- -CGCCGc-CCGCCg-CGGUag--GACGACCc -5'
6657 5' -64.2 NC_001847.1 + 101848 0.66 0.521371
Target:  5'- uGCGcacaaacGCGGG-GGCGUCGUCCUcGCcaaucaGGGg -3'
miRNA:   3'- -CGC-------CGCCCgCCGCGGUAGGA-CGa-----CCC- -5'
6657 5' -64.2 NC_001847.1 + 83273 0.66 0.513008
Target:  5'- -nGGCGGGCgcagaGGCGCaCA-CCUGC-GGc -3'
miRNA:   3'- cgCCGCCCG-----CCGCG-GUaGGACGaCCc -5'
6657 5' -64.2 NC_001847.1 + 5927 0.66 0.494629
Target:  5'- gGCGGaUGGGCGGCggacgacggGCCcgCCcGCUGc- -3'
miRNA:   3'- -CGCC-GCCCGCCG---------CGGuaGGaCGACcc -5'
6657 5' -64.2 NC_001847.1 + 100641 0.66 0.541082
Target:  5'- cUGGCu-GCGGCGCCAgggccgCgCUGCUGcGGc -3'
miRNA:   3'- cGCCGccCGCCGCGGUa-----G-GACGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 80855 0.66 0.541082
Target:  5'- gGCGGCGGcGCGcGUcgagGCCGUCCgGCa--- -3'
miRNA:   3'- -CGCCGCC-CGC-CG----CGGUAGGaCGaccc -5'
6657 5' -64.2 NC_001847.1 + 77598 0.66 0.513008
Target:  5'- aCGGCGGcacccguuucugGCGGCGCC-----GCUGGGc -3'
miRNA:   3'- cGCCGCC------------CGCCGCGGuaggaCGACCC- -5'
6657 5' -64.2 NC_001847.1 + 29503 0.66 0.528848
Target:  5'- gGCcGCGGGCGGCGCUucggCCgcagaGCUcgcccgcgcggcgcGGGc -3'
miRNA:   3'- -CGcCGCCCGCCGCGGua--GGa----CGA--------------CCC- -5'
6657 5' -64.2 NC_001847.1 + 34808 0.66 0.522303
Target:  5'- cGCGGCcgcuGGcGCGGCagGCCGaCCgggcGCUGGa -3'
miRNA:   3'- -CGCCG----CC-CGCCG--CGGUaGGa---CGACCc -5'
6657 5' -64.2 NC_001847.1 + 107645 0.66 0.541082
Target:  5'- gGCgGGUGGGuCGGCcgGCCGUCaaaacGCaGGGg -3'
miRNA:   3'- -CG-CCGCCC-GCCG--CGGUAGga---CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 70638 0.66 0.513008
Target:  5'- gGCGcugcGCGGGCuggaugacguGGcCGCgCAU-CUGCUGGGg -3'
miRNA:   3'- -CGC----CGCCCG----------CC-GCG-GUAgGACGACCC- -5'
6657 5' -64.2 NC_001847.1 + 82905 0.66 0.513008
Target:  5'- cGCGGCGcGCGGCGCCcgggggcuuuUUCUcGCUGu- -3'
miRNA:   3'- -CGCCGCcCGCCGCGGu---------AGGA-CGACcc -5'
6657 5' -64.2 NC_001847.1 + 95096 0.66 0.494629
Target:  5'- cGUGGCGGGgGGCGCgAUUg----GGGg -3'
miRNA:   3'- -CGCCGCCCgCCGCGgUAGgacgaCCC- -5'
6657 5' -64.2 NC_001847.1 + 103587 0.66 0.503782
Target:  5'- cGCcGCcGGCGGCGCCggccucgucgucGUCCgacgagGCgGGGg -3'
miRNA:   3'- -CGcCGcCCGCCGCGG------------UAGGa-----CGaCCC- -5'
6657 5' -64.2 NC_001847.1 + 34377 0.66 0.516718
Target:  5'- uGCGGCcgaaacaacGGCGGcCGCCG-CCgcggcagacgcggcGCUGGGg -3'
miRNA:   3'- -CGCCGc--------CCGCC-GCGGUaGGa-------------CGACCC- -5'
6657 5' -64.2 NC_001847.1 + 130524 0.66 0.531663
Target:  5'- cCGGCGGGCcgcccGCGCCGagcuggCCgaGCUGuGGc -3'
miRNA:   3'- cGCCGCCCGc----CGCGGUa-----GGa-CGAC-CC- -5'
6657 5' -64.2 NC_001847.1 + 70706 0.66 0.494629
Target:  5'- gGCGGCGGG-GGCGCCcgcggCgaGCgcgaGGa -3'
miRNA:   3'- -CGCCGCCCgCCGCGGua---GgaCGa---CCc -5'
6657 5' -64.2 NC_001847.1 + 18526 0.66 0.541082
Target:  5'- cGCuGCGGGCGcGcCGCCGUCC-GCg--- -3'
miRNA:   3'- -CGcCGCCCGC-C-GCGGUAGGaCGaccc -5'
6657 5' -64.2 NC_001847.1 + 49737 0.66 0.503782
Target:  5'- cCGGCGaGGCGGUGCgCGUgCcGCUGu- -3'
miRNA:   3'- cGCCGC-CCGCCGCG-GUAgGaCGACcc -5'
6657 5' -64.2 NC_001847.1 + 131438 0.66 0.522303
Target:  5'- cGCGGCGGccGCGGgGCCcgcggCCgUGUucgugccggagaUGGGg -3'
miRNA:   3'- -CGCCGCC--CGCCgCGGua---GG-ACG------------ACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.