Results 21 - 40 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6657 | 5' | -64.2 | NC_001847.1 | + | 14334 | 0.66 | 0.541082 |
Target: 5'- aGCGGCGGGCagagaaGGgGUg--CCUGCUGc- -3' miRNA: 3'- -CGCCGCCCG------CCgCGguaGGACGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 82905 | 0.66 | 0.513008 |
Target: 5'- cGCGGCGcGCGGCGCCcgggggcuuuUUCUcGCUGu- -3' miRNA: 3'- -CGCCGCcCGCCGCGGu---------AGGA-CGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 70706 | 0.66 | 0.494629 |
Target: 5'- gGCGGCGGG-GGCGCCcgcggCgaGCgcgaGGa -3' miRNA: 3'- -CGCCGCCCgCCGCGGua---GgaCGa---CCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 15127 | 0.66 | 0.541082 |
Target: 5'- aCGGC-GGCGGUGCUggCCUuGCUacugcgcgucGGGg -3' miRNA: 3'- cGCCGcCCGCCGCGGuaGGA-CGA----------CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 34808 | 0.66 | 0.522303 |
Target: 5'- cGCGGCcgcuGGcGCGGCagGCCGaCCgggcGCUGGa -3' miRNA: 3'- -CGCCG----CC-CGCCG--CGGUaGGa---CGACCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 103587 | 0.66 | 0.503782 |
Target: 5'- cGCcGCcGGCGGCGCCggccucgucgucGUCCgacgagGCgGGGg -3' miRNA: 3'- -CGcCGcCCGCCGCGG------------UAGGa-----CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 18526 | 0.66 | 0.541082 |
Target: 5'- cGCuGCGGGCGcGcCGCCGUCC-GCg--- -3' miRNA: 3'- -CGcCGCCCGC-C-GCGGUAGGaCGaccc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 96631 | 0.66 | 0.550556 |
Target: 5'- cGCGG-GGGcCGGCGgguacgCGUCgUGCgcgGGGg -3' miRNA: 3'- -CGCCgCCC-GCCGCg-----GUAGgACGa--CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 107645 | 0.66 | 0.541082 |
Target: 5'- gGCgGGUGGGuCGGCcgGCCGUCaaaacGCaGGGg -3' miRNA: 3'- -CG-CCGCCC-GCCG--CGGUAGga---CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 81450 | 0.66 | 0.513008 |
Target: 5'- gGCGGCGcgcucGCGcGCGCaCAUCUugcgGCUGGcGg -3' miRNA: 3'- -CGCCGCc----CGC-CGCG-GUAGGa---CGACC-C- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 75344 | 0.66 | 0.513008 |
Target: 5'- -gGGCGGGCGGCagugguaaaaGCgCGUCUcgGC-GGGc -3' miRNA: 3'- cgCCGCCCGCCG----------CG-GUAGGa-CGaCCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 73186 | 0.66 | 0.522303 |
Target: 5'- cCGGCGGGCacGGCGCgCGggCagGCUGcGGu -3' miRNA: 3'- cGCCGCCCG--CCGCG-GUagGa-CGAC-CC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 131438 | 0.66 | 0.522303 |
Target: 5'- cGCGGCGGccGCGGgGCCcgcggCCgUGUucgugccggagaUGGGg -3' miRNA: 3'- -CGCCGCC--CGCCgCGGua---GG-ACG------------ACCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 14809 | 0.66 | 0.503782 |
Target: 5'- aGCGGCGGagcugcGCGGCGC---CCUGCgcgcgGuGGa -3' miRNA: 3'- -CGCCGCC------CGCCGCGguaGGACGa----C-CC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 80855 | 0.66 | 0.541082 |
Target: 5'- gGCGGCGGcGCGcGUcgagGCCGUCCgGCa--- -3' miRNA: 3'- -CGCCGCC-CGC-CG----CGGUAGGaCGaccc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 5927 | 0.66 | 0.494629 |
Target: 5'- gGCGGaUGGGCGGCggacgacggGCCcgCCcGCUGc- -3' miRNA: 3'- -CGCC-GCCCGCCG---------CGGuaGGaCGACcc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 70523 | 0.66 | 0.494629 |
Target: 5'- aGCGGCugcuGGGCGGCGUg--CUggcGCUGGc -3' miRNA: 3'- -CGCCG----CCCGCCGCGguaGGa--CGACCc -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 101848 | 0.66 | 0.521371 |
Target: 5'- uGCGcacaaacGCGGG-GGCGUCGUCCUcGCcaaucaGGGg -3' miRNA: 3'- -CGC-------CGCCCgCCGCGGUAGGA-CGa-----CCC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 130524 | 0.66 | 0.531663 |
Target: 5'- cCGGCGGGCcgcccGCGCCGagcuggCCgaGCUGuGGc -3' miRNA: 3'- cGCCGCCCGc----CGCGGUa-----GGa-CGAC-CC- -5' |
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6657 | 5' | -64.2 | NC_001847.1 | + | 100641 | 0.66 | 0.541082 |
Target: 5'- cUGGCu-GCGGCGCCAgggccgCgCUGCUGcGGc -3' miRNA: 3'- cGCCGccCGCCGCGGUa-----G-GACGAC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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