Results 1 - 20 of 304 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 111554 | 1.11 | 0.003203 |
Target: 5'- cCCCGGCAAAGGCAAGGUAAGCGCAUCc -3' miRNA: 3'- -GGGCCGUUUCCGUUCCAUUCGCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 8741 | 1.11 | 0.003203 |
Target: 5'- cCCCGGCAAAGGCAAGGUAAGCGCAUCc -3' miRNA: 3'- -GGGCCGUUUCCGUUCCAUUCGCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 89570 | 0.8 | 0.317717 |
Target: 5'- gCCCGGCGAGGGCGuGG--AGCGCGa- -3' miRNA: 3'- -GGGCCGUUUCCGUuCCauUCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 95938 | 0.79 | 0.353684 |
Target: 5'- gCCCGGCGccggaacgcuggcGGGCGAGcGUGAGCGCAg- -3' miRNA: 3'- -GGGCCGUu------------UCCGUUC-CAUUCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 75340 | 0.79 | 0.356944 |
Target: 5'- uCCCgGGCGGGcGGCAGuGGUAaaAGCGCGUCu -3' miRNA: 3'- -GGG-CCGUUU-CCGUU-CCAU--UCGCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 112086 | 0.78 | 0.407435 |
Target: 5'- aCCCGGCGGuccGGcGCAAGGUGgacuggcucgagcGGCGCGUg -3' miRNA: 3'- -GGGCCGUU---UC-CGUUCCAU-------------UCGCGUAg -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 24849 | 0.78 | 0.398566 |
Target: 5'- gUCCGGCAcccaGAGGCAgcugaacAGGUugucgcAGCGCGUCg -3' miRNA: 3'- -GGGCCGU----UUCCGU-------UCCAu-----UCGCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 119539 | 0.77 | 0.417332 |
Target: 5'- gCCGGCAGgcuGGGCAAGGggcGCGCGg- -3' miRNA: 3'- gGGCCGUU---UCCGUUCCauuCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 54536 | 0.76 | 0.493425 |
Target: 5'- aCCgCGGCGGGGGCGGGGgcggggAAGaCGCAgUCg -3' miRNA: 3'- -GG-GCCGUUUCCGUUCCa-----UUC-GCGU-AG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 67 | 0.76 | 0.472798 |
Target: 5'- gCgGGCGGGGGCGGGGUGggggaugGGCGCGg- -3' miRNA: 3'- gGgCCGUUUCCGUUCCAU-------UCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 119403 | 0.76 | 0.513445 |
Target: 5'- gUCGGCAuAGGCGcccuccAGGUu-GCGCAUCg -3' miRNA: 3'- gGGCCGUuUCCGU------UCCAuuCGCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 42543 | 0.76 | 0.48355 |
Target: 5'- gCUCGGUGAGGGCGAGGacgcGGcCGCGUCc -3' miRNA: 3'- -GGGCCGUUUCCGUUCCau--UC-GCGUAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 51528 | 0.76 | 0.513445 |
Target: 5'- gCCGGC--AGGCGGGGgcGGCGCccaggcGUCg -3' miRNA: 3'- gGGCCGuuUCCGUUCCauUCGCG------UAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 14222 | 0.75 | 0.533789 |
Target: 5'- gCCGGcCGGGGGCGuGGUGAGgGCAa- -3' miRNA: 3'- gGGCC-GUUUCCGUuCCAUUCgCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 95160 | 0.75 | 0.554412 |
Target: 5'- gCCGGCAu-GGCGGGG--GGCGCgAUCg -3' miRNA: 3'- gGGCCGUuuCCGUUCCauUCGCG-UAG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 108960 | 0.74 | 0.628018 |
Target: 5'- cCCCGGCGguGAGcgaGCAGGG-AGGCGCGg- -3' miRNA: 3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 108866 | 0.74 | 0.628018 |
Target: 5'- cCCCGGCGguGAGcaaGCAGGG-AGGCGCGg- -3' miRNA: 3'- -GGGCCGU--UUC---CGUUCCaUUCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 19890 | 0.74 | 0.617427 |
Target: 5'- gCUGGCGGGcGCGAGGUAgaAGCGCAc- -3' miRNA: 3'- gGGCCGUUUcCGUUCCAU--UCGCGUag -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 32878 | 0.74 | 0.59629 |
Target: 5'- uCCUGGCGcuggAGGGCAcGGUGcGCGCcgCg -3' miRNA: 3'- -GGGCCGU----UUCCGUuCCAUuCGCGuaG- -5' |
|||||||
6666 | 5' | -53.1 | NC_001847.1 | + | 111427 | 0.74 | 0.575264 |
Target: 5'- gCUCGGcCGGGGGCGGGGggagGAGCGCc-- -3' miRNA: 3'- -GGGCC-GUUUCCGUUCCa---UUCGCGuag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home