Results 1 - 20 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6669 | 3' | -70.4 | NC_001847.1 | + | 278 | 0.7 | 0.169927 |
Target: 5'- cCGGGggccgccgagcccGCGcGGGCGCCGuCCCCGCGc--- -3' miRNA: 3'- -GCCC-------------CGC-CCCGCGGC-GGGGCGCcaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 353 | 0.68 | 0.218772 |
Target: 5'- cCGGGcuucgcgcccCGGGGC-CCGCCCCGCGcGcCg -3' miRNA: 3'- -GCCCc---------GCCCCGcGGCGGGGCGC-CaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 490 | 0.73 | 0.102267 |
Target: 5'- gCGGcGGCGGGGCgGCCGCgcgccaaccccccugUCCGCGGa-- -3' miRNA: 3'- -GCC-CCGCCCCG-CGGCG---------------GGGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 879 | 0.68 | 0.223717 |
Target: 5'- gCGGcGGCGGcccGCGCCgggGCCgCCGCGGcCg -3' miRNA: 3'- -GCC-CCGCCc--CGCGG---CGG-GGCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 976 | 0.67 | 0.272591 |
Target: 5'- cCGGgccGGCGGGGCuuCCGCCgCgGCGG-Cg -3' miRNA: 3'- -GCC---CCGCCCCGc-GGCGG-GgCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 1094 | 0.69 | 0.19543 |
Target: 5'- -cGGGCGccgcggccgcGGGCGgCGCCgCCGCGGcCUc -3' miRNA: 3'- gcCCCGC----------CCCGCgGCGG-GGCGCCaGA- -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2073 | 0.69 | 0.191031 |
Target: 5'- aGcGGUGGcGGCGagCGCCCCGCGGg-- -3' miRNA: 3'- gCcCCGCC-CCGCg-GCGGGGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2105 | 0.68 | 0.21392 |
Target: 5'- gCGGcGGCGGGcCGCgaucucggccagCGCCUCGgGGUCg -3' miRNA: 3'- -GCC-CCGCCCcGCG------------GCGGGGCgCCAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2208 | 0.7 | 0.148134 |
Target: 5'- uCGGGGCGGcaguaGGcCGCCaGCgCCGCGGcgCUg -3' miRNA: 3'- -GCCCCGCC-----CC-GCGG-CGgGGCGCCa-GA- -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2292 | 0.68 | 0.218772 |
Target: 5'- uCGGcGGCGGGGcCGCCgggcggcauggGCCCCagcacGCGGg-- -3' miRNA: 3'- -GCC-CCGCCCC-GCGG-----------CGGGG-----CGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2439 | 0.69 | 0.178352 |
Target: 5'- gCGGccGGCaGGGcCGCCGCCUCGCcGUCc -3' miRNA: 3'- -GCC--CCGcCCC-GCGGCGGGGCGcCAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2471 | 0.66 | 0.290072 |
Target: 5'- aGcGGGCGGcGGCGCCcccGCCgCCGUGugaagacGUCg -3' miRNA: 3'- gC-CCCGCC-CCGCGG---CGG-GGCGC-------CAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2571 | 0.68 | 0.228757 |
Target: 5'- uCGGcGCGGGcgccuGCGCgGCCgCCGCGGcCg -3' miRNA: 3'- -GCCcCGCCC-----CGCGgCGG-GGCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2755 | 0.66 | 0.309716 |
Target: 5'- cCGGcGCGGcGGCGCCGgcgccggcgcCCCCGcCGG-Cg -3' miRNA: 3'- -GCCcCGCC-CCGCGGC----------GGGGC-GCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2872 | 0.67 | 0.266763 |
Target: 5'- aGGccgacGCGcGGGcCGCCGCgCCGCGcGUCg -3' miRNA: 3'- gCCc----CGC-CCC-GCGGCGgGGCGC-CAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2885 | 0.66 | 0.315606 |
Target: 5'- uCGGGcCGGGuGCGUCGCCguucgggCCGgaCGGUCg -3' miRNA: 3'- -GCCCcGCCC-CGCGGCGG-------GGC--GCCAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2917 | 0.68 | 0.21392 |
Target: 5'- gCGGGGCcacGGuccGCGCCGCCagCGCGGcCg -3' miRNA: 3'- -GCCCCGc--CC---CGCGGCGGg-GCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 3255 | 0.73 | 0.091969 |
Target: 5'- cCGGcGGCaGGGGCGCCggcGCCgCGCGGcCg -3' miRNA: 3'- -GCC-CCG-CCCCGCGG---CGGgGCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 3312 | 0.68 | 0.228757 |
Target: 5'- gCGcGGCGcGGGCGCCGCUgCCGcCGG-Cg -3' miRNA: 3'- -GCcCCGC-CCCGCGGCGG-GGC-GCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 3426 | 0.68 | 0.21392 |
Target: 5'- gGGGGCGccaGGCGCaGCCCagGgGGUCg -3' miRNA: 3'- gCCCCGCc--CCGCGgCGGGg-CgCCAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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