miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 3' -70.4 NC_001847.1 + 42599 0.66 0.29069
Target:  5'- gGGGGUGGugacagggacGGCGCCGCCgCGgaGGg-- -3'
miRNA:   3'- gCCCCGCC----------CCGCGGCGGgGCg-CCaga -5'
6669 3' -70.4 NC_001847.1 + 93140 0.66 0.284554
Target:  5'- -cGGGCugccGGCGCC-CCCCGCGGg-- -3'
miRNA:   3'- gcCCCGcc--CCGCGGcGGGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 54519 0.66 0.29069
Target:  5'- gGGGGCgguGGGGCgggGCCGUCCgGgGG-Cg -3'
miRNA:   3'- gCCCCG---CCCCG---CGGCGGGgCgCCaGa -5'
6669 3' -70.4 NC_001847.1 + 83494 0.66 0.280922
Target:  5'- uGcGGGCGcaGCGCCGCggcgcugcgugccuuCCUGCGGUCc -3'
miRNA:   3'- gC-CCCGCccCGCGGCG---------------GGGCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 19194 0.66 0.284554
Target:  5'- gGGGGCGGGGUcuGUgGCCCagacgGCGaGUg- -3'
miRNA:   3'- gCCCCGCCCCG--CGgCGGGg----CGC-CAga -5'
6669 3' -70.4 NC_001847.1 + 64184 0.66 0.284554
Target:  5'- aCGGGGCGgcGGGCGCgacgcuggCGaCCCUgGCGcGUCa -3'
miRNA:   3'- -GCCCCGC--CCCGCG--------GC-GGGG-CGC-CAGa -5'
6669 3' -70.4 NC_001847.1 + 47556 0.66 0.284554
Target:  5'- gCGGGcGCGGGGa---GCCCgGCGGcCg -3'
miRNA:   3'- -GCCC-CGCCCCgcggCGGGgCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 89886 0.66 0.29069
Target:  5'- uGGGGCgccuucGGGGaCGCgGCgCCCGaGGUUg -3'
miRNA:   3'- gCCCCG------CCCC-GCGgCG-GGGCgCCAGa -5'
6669 3' -70.4 NC_001847.1 + 2471 0.66 0.290072
Target:  5'- aGcGGGCGGcGGCGCCcccGCCgCCGUGugaagacGUCg -3'
miRNA:   3'- gC-CCCGCC-CCGCGG---CGG-GGCGC-------CAGa -5'
6669 3' -70.4 NC_001847.1 + 33540 0.66 0.277924
Target:  5'- -cGGGCGcGGGCGCCGaagaggcggcagaCgCCGCGGa-- -3'
miRNA:   3'- gcCCCGC-CCCGCGGC-------------GgGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 60864 0.66 0.29069
Target:  5'- aGGGcguccagcGCGGGGCgGCCGCgCCCG-GGa-- -3'
miRNA:   3'- gCCC--------CGCCCCG-CGGCG-GGGCgCCaga -5'
6669 3' -70.4 NC_001847.1 + 75654 0.66 0.296928
Target:  5'- cCGGaGGCGcGGGCGuuGCUcgugaaggCCG-GGUCg -3'
miRNA:   3'- -GCC-CCGC-CCCGCggCGG--------GGCgCCAGa -5'
6669 3' -70.4 NC_001847.1 + 108038 0.66 0.283946
Target:  5'- gCGGccGGCGGGGCGCgCGCggcaaaggguuugCCUGCG-UCUc -3'
miRNA:   3'- -GCC--CCGCCCCGCG-GCG-------------GGGCGCcAGA- -5'
6669 3' -70.4 NC_001847.1 + 55455 0.66 0.29069
Target:  5'- uGGcgccGGCGGGGCGCgCGCCgCGCu---- -3'
miRNA:   3'- gCC----CCGCCCCGCG-GCGGgGCGccaga -5'
6669 3' -70.4 NC_001847.1 + 133708 0.66 0.284554
Target:  5'- aCGGuGGCcacgcgccuGGGC-CCGCCaCCGCGGUg- -3'
miRNA:   3'- -GCC-CCGc--------CCCGcGGCGG-GGCGCCAga -5'
6669 3' -70.4 NC_001847.1 + 48828 0.66 0.296928
Target:  5'- cCGGGccuugccgcGCgGGGGCGCCucgGCCgCGCGG-Cg -3'
miRNA:   3'- -GCCC---------CG-CCCCGCGG---CGGgGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 117272 0.66 0.296928
Target:  5'- gCGGGGCcgccguuuuGGGGCGCCccGCgCCCGaCGaccUCUg -3'
miRNA:   3'- -GCCCCG---------CCCCGCGG--CG-GGGC-GCc--AGA- -5'
6669 3' -70.4 NC_001847.1 + 57683 0.66 0.296928
Target:  5'- aCGGuGGUGcuGGGCGCCGCgggugCCGCGcUCUc -3'
miRNA:   3'- -GCC-CCGC--CCCGCGGCGg----GGCGCcAGA- -5'
6669 3' -70.4 NC_001847.1 + 55534 0.66 0.284554
Target:  5'- gCGGGGCGaccGGCGacaaCGCCCC-CGG-Cg -3'
miRNA:   3'- -GCCCCGCc--CCGCg---GCGGGGcGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 43243 0.66 0.278522
Target:  5'- gGGGGCgcgcgGGcGGCGCgGCgCCCGgGGg-- -3'
miRNA:   3'- gCCCCG-----CC-CCGCGgCG-GGGCgCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.