miRNA display CGI


Results 1 - 20 of 315 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 3' -70.4 NC_001847.1 + 278 0.7 0.169927
Target:  5'- cCGGGggccgccgagcccGCGcGGGCGCCGuCCCCGCGc--- -3'
miRNA:   3'- -GCCC-------------CGC-CCCGCGGC-GGGGCGCcaga -5'
6669 3' -70.4 NC_001847.1 + 353 0.68 0.218772
Target:  5'- cCGGGcuucgcgcccCGGGGC-CCGCCCCGCGcGcCg -3'
miRNA:   3'- -GCCCc---------GCCCCGcGGCGGGGCGC-CaGa -5'
6669 3' -70.4 NC_001847.1 + 490 0.73 0.102267
Target:  5'- gCGGcGGCGGGGCgGCCGCgcgccaaccccccugUCCGCGGa-- -3'
miRNA:   3'- -GCC-CCGCCCCG-CGGCG---------------GGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 879 0.68 0.223717
Target:  5'- gCGGcGGCGGcccGCGCCgggGCCgCCGCGGcCg -3'
miRNA:   3'- -GCC-CCGCCc--CGCGG---CGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 976 0.67 0.272591
Target:  5'- cCGGgccGGCGGGGCuuCCGCCgCgGCGG-Cg -3'
miRNA:   3'- -GCC---CCGCCCCGc-GGCGG-GgCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 1094 0.69 0.19543
Target:  5'- -cGGGCGccgcggccgcGGGCGgCGCCgCCGCGGcCUc -3'
miRNA:   3'- gcCCCGC----------CCCGCgGCGG-GGCGCCaGA- -5'
6669 3' -70.4 NC_001847.1 + 2073 0.69 0.191031
Target:  5'- aGcGGUGGcGGCGagCGCCCCGCGGg-- -3'
miRNA:   3'- gCcCCGCC-CCGCg-GCGGGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 2105 0.68 0.21392
Target:  5'- gCGGcGGCGGGcCGCgaucucggccagCGCCUCGgGGUCg -3'
miRNA:   3'- -GCC-CCGCCCcGCG------------GCGGGGCgCCAGa -5'
6669 3' -70.4 NC_001847.1 + 2208 0.7 0.148134
Target:  5'- uCGGGGCGGcaguaGGcCGCCaGCgCCGCGGcgCUg -3'
miRNA:   3'- -GCCCCGCC-----CC-GCGG-CGgGGCGCCa-GA- -5'
6669 3' -70.4 NC_001847.1 + 2292 0.68 0.218772
Target:  5'- uCGGcGGCGGGGcCGCCgggcggcauggGCCCCagcacGCGGg-- -3'
miRNA:   3'- -GCC-CCGCCCC-GCGG-----------CGGGG-----CGCCaga -5'
6669 3' -70.4 NC_001847.1 + 2439 0.69 0.178352
Target:  5'- gCGGccGGCaGGGcCGCCGCCUCGCcGUCc -3'
miRNA:   3'- -GCC--CCGcCCC-GCGGCGGGGCGcCAGa -5'
6669 3' -70.4 NC_001847.1 + 2471 0.66 0.290072
Target:  5'- aGcGGGCGGcGGCGCCcccGCCgCCGUGugaagacGUCg -3'
miRNA:   3'- gC-CCCGCC-CCGCGG---CGG-GGCGC-------CAGa -5'
6669 3' -70.4 NC_001847.1 + 2571 0.68 0.228757
Target:  5'- uCGGcGCGGGcgccuGCGCgGCCgCCGCGGcCg -3'
miRNA:   3'- -GCCcCGCCC-----CGCGgCGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 2755 0.66 0.309716
Target:  5'- cCGGcGCGGcGGCGCCGgcgccggcgcCCCCGcCGG-Cg -3'
miRNA:   3'- -GCCcCGCC-CCGCGGC----------GGGGC-GCCaGa -5'
6669 3' -70.4 NC_001847.1 + 2872 0.67 0.266763
Target:  5'- aGGccgacGCGcGGGcCGCCGCgCCGCGcGUCg -3'
miRNA:   3'- gCCc----CGC-CCC-GCGGCGgGGCGC-CAGa -5'
6669 3' -70.4 NC_001847.1 + 2885 0.66 0.315606
Target:  5'- uCGGGcCGGGuGCGUCGCCguucgggCCGgaCGGUCg -3'
miRNA:   3'- -GCCCcGCCC-CGCGGCGG-------GGC--GCCAGa -5'
6669 3' -70.4 NC_001847.1 + 2917 0.68 0.21392
Target:  5'- gCGGGGCcacGGuccGCGCCGCCagCGCGGcCg -3'
miRNA:   3'- -GCCCCGc--CC---CGCGGCGGg-GCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 3255 0.73 0.091969
Target:  5'- cCGGcGGCaGGGGCGCCggcGCCgCGCGGcCg -3'
miRNA:   3'- -GCC-CCG-CCCCGCGG---CGGgGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 3312 0.68 0.228757
Target:  5'- gCGcGGCGcGGGCGCCGCUgCCGcCGG-Cg -3'
miRNA:   3'- -GCcCCGC-CCCGCGGCGG-GGC-GCCaGa -5'
6669 3' -70.4 NC_001847.1 + 3426 0.68 0.21392
Target:  5'- gGGGGCGccaGGCGCaGCCCagGgGGUCg -3'
miRNA:   3'- gCCCCGCc--CCGCGgCGGGg-CgCCAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.