miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 3' -70.4 NC_001847.1 + 114947 1.06 0.000253
Target:  5'- gCGGGGCGGGGCGCCGCCCCGCGGUCUa -3'
miRNA:   3'- -GCCCCGCCCCGCGGCGGGGCGCCAGA- -5'
6669 3' -70.4 NC_001847.1 + 3986 0.81 0.024799
Target:  5'- gGGGGcCGGGcGCGCgGCCCCGCGGg-- -3'
miRNA:   3'- gCCCC-GCCC-CGCGgCGGGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 125239 0.8 0.028822
Target:  5'- gGGGGCGGGGC-CCGagaCCaCGCGGUCg -3'
miRNA:   3'- gCCCCGCCCCGcGGCg--GG-GCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 22426 0.8 0.028822
Target:  5'- gGGGGCGGGGC-CCGagaCCaCGCGGUCg -3'
miRNA:   3'- gCCCCGCCCCGcGGCg--GG-GCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 106798 0.79 0.035199
Target:  5'- gGGGGCccGGGcGCGCgGCCCCGCGGg-- -3'
miRNA:   3'- gCCCCG--CCC-CGCGgCGGGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 86504 0.79 0.036088
Target:  5'- gGGGGCGGcGGCGCCccGCCgCCGCGG-Cg -3'
miRNA:   3'- gCCCCGCC-CCGCGG--CGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 29444 0.78 0.040872
Target:  5'- uGGGGCGuGGCGCCG-CCCGCGGcCg -3'
miRNA:   3'- gCCCCGCcCCGCGGCgGGGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 48640 0.77 0.048628
Target:  5'- gCGGcGGCGGGGCGCCGCcgccCCCGCaGcCUc -3'
miRNA:   3'- -GCC-CCGCCCCGCGGCG----GGGCGcCaGA- -5'
6669 3' -70.4 NC_001847.1 + 66342 0.77 0.050969
Target:  5'- uGGGGCGcGGGCGCCGCcguggcgaucgucCCCGUGG-Cg -3'
miRNA:   3'- gCCCCGC-CCCGCGGCG-------------GGGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 84545 0.76 0.053685
Target:  5'- gCGGGGCGGGGCGUgCGCCUCGUacacGGcCUc -3'
miRNA:   3'- -GCCCCGCCCCGCG-GCGGGGCG----CCaGA- -5'
6669 3' -70.4 NC_001847.1 + 34278 0.76 0.056402
Target:  5'- gCGGcGGCuGGGCGCCGCgCUCGCGGcCg -3'
miRNA:   3'- -GCC-CCGcCCCGCGGCG-GGGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 87915 0.76 0.058383
Target:  5'- aGGGGCGGGGCguggggcugggcgcgGCCGCgCaCGCGGUg- -3'
miRNA:   3'- gCCCCGCCCCG---------------CGGCGgG-GCGCCAga -5'
6669 3' -70.4 NC_001847.1 + 8130 0.75 0.06379
Target:  5'- gCGGGGCGGGcGgGCCgacgaGCCUCGCGGggCUg -3'
miRNA:   3'- -GCCCCGCCC-CgCGG-----CGGGGCGCCa-GA- -5'
6669 3' -70.4 NC_001847.1 + 45506 0.75 0.06379
Target:  5'- cCGGGGC-GGGCGCCGCCgCCggGCGG-Cg -3'
miRNA:   3'- -GCCCCGcCCCGCGGCGG-GG--CGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 110943 0.75 0.06379
Target:  5'- gCGGGGCGGGcGgGCCgacgaGCCUCGCGGggCUg -3'
miRNA:   3'- -GCCCCGCCC-CgCGG-----CGGGGCGCCa-GA- -5'
6669 3' -70.4 NC_001847.1 + 79600 0.75 0.06379
Target:  5'- gGGGGCgccgGGGGCGUugucgccgguCGCCCCGCGG-Cg -3'
miRNA:   3'- gCCCCG----CCCCGCG----------GCGGGGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 125073 0.75 0.070365
Target:  5'- gCGcGGCGGGGCGCUggGCCCgCGCGGcCa -3'
miRNA:   3'- -GCcCCGCCCCGCGG--CGGG-GCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 17863 0.75 0.072108
Target:  5'- uCGGGcGCGGGGCGCCccaaaacggcgGCCCCGCa---- -3'
miRNA:   3'- -GCCC-CGCCCCGCGG-----------CGGGGCGccaga -5'
6669 3' -70.4 NC_001847.1 + 74983 0.74 0.073892
Target:  5'- aCGGGGCGGGGCGCCagGCucaguccgCCgGCGGg-- -3'
miRNA:   3'- -GCCCCGCCCCGCGG--CG--------GGgCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 3951 0.74 0.073892
Target:  5'- gCGGGG-GGGGCGCCGUCuCCgGCGG-Cg -3'
miRNA:   3'- -GCCCCgCCCCGCGGCGG-GG-CGCCaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.