miRNA display CGI


Results 41 - 60 of 459 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 32107 0.74 0.130298
Target:  5'- cGCGAggcccgGGCuCGGGCCcccggGCGCCggggGCGGGGGc -3'
miRNA:   3'- -CGCUa-----CCG-GCCCGG-----CGCGG----CGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132709 0.74 0.133498
Target:  5'- gGCGgcGGCCcuGCCGgcCGCCGCGGGGGc -3'
miRNA:   3'- -CGCuaCCGGccCGGC--GCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 106819 0.74 0.133498
Target:  5'- cGCGggGcGCCGGGCCcgGCGCCcgccucucGCGGGGc -3'
miRNA:   3'- -CGCuaC-CGGCCCGG--CGCGG--------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 47663 0.74 0.13644
Target:  5'- cCGAgcacGGCCaaguuuacgaagcGGGCgCGCGCCGCGGGGc -3'
miRNA:   3'- cGCUa---CCGG-------------CCCG-GCGCGGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 14159 0.74 0.136771
Target:  5'- aGCGgcGGCCGGGgCG-GCCGCgcuaaaggcacGGGAGg -3'
miRNA:   3'- -CGCuaCCGGCCCgGCgCGGCG-----------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 48820 0.74 0.136771
Target:  5'- gGgGAUGuCCGGGCCuuGCCGCGcGGGGg -3'
miRNA:   3'- -CgCUACcGGCCCGGcgCGGCGC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 80817 0.74 0.140117
Target:  5'- gGCGAaGGCCGcGcGCCGCGaCUGgGGGGGc -3'
miRNA:   3'- -CGCUaCCGGC-C-CGGCGC-GGCgCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 125329 0.74 0.140117
Target:  5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3'
miRNA:   3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 22516 0.74 0.140117
Target:  5'- gGCGGcgGGCCGGGCCGgucUGCCgggacaaaggggGCGGGAc -3'
miRNA:   3'- -CGCUa-CCGGCCCGGC---GCGG------------CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 28315 0.74 0.140117
Target:  5'- cGCGAgaggcggGcGCCGGGCCcgGCGCCccGCGGGGc -3'
miRNA:   3'- -CGCUa------C-CGGCCCGG--CGCGG--CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 131128 0.74 0.140117
Target:  5'- cGCGAgaggcggGcGCCGGGCCcgGCGCCccGCGGGGc -3'
miRNA:   3'- -CGCUa------C-CGGCCCGG--CGCGG--CGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 96863 0.74 0.143538
Target:  5'- gGCGGUGGgCGGcgguCCGCGCUG-GGGAGg -3'
miRNA:   3'- -CGCUACCgGCCc---GGCGCGGCgCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 52588 0.74 0.143538
Target:  5'- gGCGgcGGCCGaGGCCGaGCCcGCGGGcGg -3'
miRNA:   3'- -CGCuaCCGGC-CCGGCgCGG-CGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 53862 0.74 0.143538
Target:  5'- gGCGcUGG-CGGcGCCGacCGCCGCGGGGGc -3'
miRNA:   3'- -CGCuACCgGCC-CGGC--GCGGCGCCCUC- -5'
6670 3' -66.1 NC_001847.1 + 124435 0.74 0.147035
Target:  5'- gGCGGcgcuUGGCCggcgcGGGCCGCGCC-CGGGc- -3'
miRNA:   3'- -CGCU----ACCGG-----CCCGGCGCGGcGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 21622 0.74 0.147035
Target:  5'- gGCGGcgcuUGGCCggcgcGGGCCGCGCC-CGGGc- -3'
miRNA:   3'- -CGCU----ACCGG-----CCCGGCGCGGcGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 31401 0.73 0.154264
Target:  5'- gGCGcgGGCuCGGGCUucccgGCGCCgGCGGGcGg -3'
miRNA:   3'- -CGCuaCCG-GCCCGG-----CGCGG-CGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 30401 0.73 0.154264
Target:  5'- gGCGGcccgagUGGCC--GCCGCGCCGCGGcGGGc -3'
miRNA:   3'- -CGCU------ACCGGccCGGCGCGGCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 134214 0.73 0.154264
Target:  5'- gGCGcgGGCuCGGGCUucccgGCGCCgGCGGGcGg -3'
miRNA:   3'- -CGCuaCCG-GCCCGG-----CGCGG-CGCCCuC- -5'
6670 3' -66.1 NC_001847.1 + 133214 0.73 0.154264
Target:  5'- gGCGGcccgagUGGCC--GCCGCGCCGCGGcGGGc -3'
miRNA:   3'- -CGCU------ACCGGccCGGCGCGGCGCC-CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.