Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6672 | 3' | -44.2 | NC_001847.1 | + | 114593 | 0.66 | 0.999997 |
Target: 5'- ---gUGUACgUGGCCGUCccCGcCGAg -3' miRNA: 3'- cuaaAUAUGaACCGGCAGuuGUuGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 82317 | 0.66 | 0.999998 |
Target: 5'- ----aAUGCgggcggGGUCGcCGGCGACGAg -3' miRNA: 3'- cuaaaUAUGaa----CCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 53869 | 0.66 | 0.999998 |
Target: 5'- ----gGUGCUguggggcGGCCGUCucuccggaaAGCAGCGGc -3' miRNA: 3'- cuaaaUAUGAa------CCGGCAG---------UUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 54524 | 0.66 | 0.999999 |
Target: 5'- cGGUggg-GCggGGCCGUCcgggggcgcaGACGGCGGg -3' miRNA: 3'- -CUAaauaUGaaCCGGCAG----------UUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 56727 | 0.66 | 0.999999 |
Target: 5'- ----------cGGCCGaugcUCAGCAACGAg -3' miRNA: 3'- cuaaauaugaaCCGGC----AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 95899 | 0.66 | 0.999998 |
Target: 5'- ------aGCUcgagaUGGCUGUCAGCGuCGAc -3' miRNA: 3'- cuaaauaUGA-----ACCGGCAGUUGUuGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 27720 | 0.66 | 0.999997 |
Target: 5'- ------gGCaaGGgCGUCAGCGGCGGa -3' miRNA: 3'- cuaaauaUGaaCCgGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 14072 | 0.66 | 0.999996 |
Target: 5'- ----gGUGCUUgGGCCGcUCGugGACa- -3' miRNA: 3'- cuaaaUAUGAA-CCGGC-AGUugUUGcu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59675 | 0.66 | 0.999995 |
Target: 5'- ----cGUGCgcucUGGCCccucccccccgGUCGGCAGCGGg -3' miRNA: 3'- cuaaaUAUGa---ACCGG-----------CAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 81786 | 0.66 | 0.999996 |
Target: 5'- ----gGUGCccgcGGCCGcCAGCAGCGc -3' miRNA: 3'- cuaaaUAUGaa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 78341 | 0.66 | 0.999998 |
Target: 5'- ------gGCUUGGgCGccgCGGCGGCGAa -3' miRNA: 3'- cuaaauaUGAACCgGCa--GUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 84022 | 0.67 | 0.999978 |
Target: 5'- ------cGCcugUGGUgGUCGACGGCGAg -3' miRNA: 3'- cuaaauaUGa--ACCGgCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 66041 | 0.67 | 0.999984 |
Target: 5'- gGAggUAUACgc-GCaCGUCGGCGGCGGc -3' miRNA: 3'- -CUaaAUAUGaacCG-GCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 134030 | 0.67 | 0.999984 |
Target: 5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3' miRNA: 3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 67293 | 0.67 | 0.999978 |
Target: 5'- ------gACUuggUGGCCG-CGGCGACGGc -3' miRNA: 3'- cuaaauaUGA---ACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 35891 | 0.67 | 0.999984 |
Target: 5'- ---aUAUACUcccGcGCCGgcugCGACAACGAg -3' miRNA: 3'- cuaaAUAUGAa--C-CGGCa---GUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 126597 | 0.67 | 0.999984 |
Target: 5'- -----------cGCCGUCGACGACGAc -3' miRNA: 3'- cuaaauaugaacCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 31217 | 0.67 | 0.999984 |
Target: 5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3' miRNA: 3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 85563 | 0.67 | 0.999989 |
Target: 5'- ---aUGUcCUcGGCCGUCGucuCAACGGc -3' miRNA: 3'- cuaaAUAuGAaCCGGCAGUu--GUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 94706 | 0.67 | 0.999989 |
Target: 5'- ----aGUAC-UGGCgCuUCAGCAGCGAg -3' miRNA: 3'- cuaaaUAUGaACCG-GcAGUUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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