miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 3' -44.2 NC_001847.1 + 115841 1.11 0.028752
Target:  5'- gGAUUUAUACUUGGCCGUCAACAACGAg -3'
miRNA:   3'- -CUAAAUAUGAACCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 66041 0.67 0.999984
Target:  5'- gGAggUAUACgc-GCaCGUCGGCGGCGGc -3'
miRNA:   3'- -CUaaAUAUGaacCG-GCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 134030 0.67 0.999984
Target:  5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 59675 0.66 0.999995
Target:  5'- ----cGUGCgcucUGGCCccucccccccgGUCGGCAGCGGg -3'
miRNA:   3'- cuaaaUAUGa---ACCGG-----------CAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 14072 0.66 0.999996
Target:  5'- ----gGUGCUUgGGCCGcUCGugGACa- -3'
miRNA:   3'- cuaaaUAUGAA-CCGGC-AGUugUUGcu -5'
6672 3' -44.2 NC_001847.1 + 27720 0.66 0.999997
Target:  5'- ------gGCaaGGgCGUCAGCGGCGGa -3'
miRNA:   3'- cuaaauaUGaaCCgGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 95899 0.66 0.999998
Target:  5'- ------aGCUcgagaUGGCUGUCAGCGuCGAc -3'
miRNA:   3'- cuaaauaUGA-----ACCGGCAGUUGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 56727 0.66 0.999999
Target:  5'- ----------cGGCCGaugcUCAGCAACGAg -3'
miRNA:   3'- cuaaauaugaaCCGGC----AGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 54524 0.66 0.999999
Target:  5'- cGGUggg-GCggGGCCGUCcgggggcgcaGACGGCGGg -3'
miRNA:   3'- -CUAaauaUGaaCCGGCAG----------UUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 84022 0.67 0.999978
Target:  5'- ------cGCcugUGGUgGUCGACGGCGAg -3'
miRNA:   3'- cuaaauaUGa--ACCGgCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 87489 0.68 0.999958
Target:  5'- ------aACUUGGCCGugcUCGGCGGCu- -3'
miRNA:   3'- cuaaauaUGAACCGGC---AGUUGUUGcu -5'
6672 3' -44.2 NC_001847.1 + 11049 0.85 0.615358
Target:  5'- ---cUAUGCUUGGCCG-CAGCGGCGGc -3'
miRNA:   3'- cuaaAUAUGAACCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 64709 0.74 0.989439
Target:  5'- ------cGCgcGGCCGUCGACAACGc -3'
miRNA:   3'- cuaaauaUGaaCCGGCAGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 34461 0.71 0.998598
Target:  5'- ------cGCggUGGCCGcCGGCGGCGAg -3'
miRNA:   3'- cuaaauaUGa-ACCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 19287 0.71 0.999074
Target:  5'- ---cUGUGCggcgGGCCGcCAACAAaCGAg -3'
miRNA:   3'- cuaaAUAUGaa--CCGGCaGUUGUU-GCU- -5'
6672 3' -44.2 NC_001847.1 + 59233 0.71 0.999074
Target:  5'- ------cGCgucGGCCGUCGGCGAUGGc -3'
miRNA:   3'- cuaaauaUGaa-CCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 89783 0.7 0.999404
Target:  5'- ----cGUACgaGGCCGUCAucGCGcugGCGAa -3'
miRNA:   3'- cuaaaUAUGaaCCGGCAGU--UGU---UGCU- -5'
6672 3' -44.2 NC_001847.1 + 21389 0.69 0.999825
Target:  5'- ----------cGGCuCGUCAGCGACGAu -3'
miRNA:   3'- cuaaauaugaaCCG-GCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 116073 0.69 0.999867
Target:  5'- ------aGCggGGCCGaCGACGGCGAc -3'
miRNA:   3'- cuaaauaUGaaCCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 58281 0.76 0.968412
Target:  5'- ---aUGUGCUcGGCCG-CGGCGACGGc -3'
miRNA:   3'- cuaaAUAUGAaCCGGCaGUUGUUGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.