Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6672 | 3' | -44.2 | NC_001847.1 | + | 11049 | 0.85 | 0.615358 |
Target: 5'- ---cUAUGCUUGGCCG-CAGCGGCGGc -3' miRNA: 3'- cuaaAUAUGAACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 54524 | 0.66 | 0.999999 |
Target: 5'- cGGUggg-GCggGGCCGUCcgggggcgcaGACGGCGGg -3' miRNA: 3'- -CUAaauaUGaaCCGGCAG----------UUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 56727 | 0.66 | 0.999999 |
Target: 5'- ----------cGGCCGaugcUCAGCAACGAg -3' miRNA: 3'- cuaaauaugaaCCGGC----AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 95899 | 0.66 | 0.999998 |
Target: 5'- ------aGCUcgagaUGGCUGUCAGCGuCGAc -3' miRNA: 3'- cuaaauaUGA-----ACCGGCAGUUGUuGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 27720 | 0.66 | 0.999997 |
Target: 5'- ------gGCaaGGgCGUCAGCGGCGGa -3' miRNA: 3'- cuaaauaUGaaCCgGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 14072 | 0.66 | 0.999996 |
Target: 5'- ----gGUGCUUgGGCCGcUCGugGACa- -3' miRNA: 3'- cuaaaUAUGAA-CCGGC-AGUugUUGcu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59675 | 0.66 | 0.999995 |
Target: 5'- ----cGUGCgcucUGGCCccucccccccgGUCGGCAGCGGg -3' miRNA: 3'- cuaaaUAUGa---ACCGG-----------CAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 134030 | 0.67 | 0.999984 |
Target: 5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3' miRNA: 3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 66041 | 0.67 | 0.999984 |
Target: 5'- gGAggUAUACgc-GCaCGUCGGCGGCGGc -3' miRNA: 3'- -CUaaAUAUGaacCG-GCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 84022 | 0.67 | 0.999978 |
Target: 5'- ------cGCcugUGGUgGUCGACGGCGAg -3' miRNA: 3'- cuaaauaUGa--ACCGgCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 87489 | 0.68 | 0.999958 |
Target: 5'- ------aACUUGGCCGugcUCGGCGGCu- -3' miRNA: 3'- cuaaauaUGAACCGGC---AGUUGUUGcu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 116073 | 0.69 | 0.999867 |
Target: 5'- ------aGCggGGCCGaCGACGGCGAc -3' miRNA: 3'- cuaaauaUGaaCCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 21389 | 0.69 | 0.999825 |
Target: 5'- ----------cGGCuCGUCAGCGACGAu -3' miRNA: 3'- cuaaauaugaaCCG-GCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 89783 | 0.7 | 0.999404 |
Target: 5'- ----cGUACgaGGCCGUCAucGCGcugGCGAa -3' miRNA: 3'- cuaaaUAUGaaCCGGCAGU--UGU---UGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59233 | 0.71 | 0.999074 |
Target: 5'- ------cGCgucGGCCGUCGGCGAUGGc -3' miRNA: 3'- cuaaauaUGaa-CCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 19287 | 0.71 | 0.999074 |
Target: 5'- ---cUGUGCggcgGGCCGcCAACAAaCGAg -3' miRNA: 3'- cuaaAUAUGaa--CCGGCaGUUGUU-GCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 34461 | 0.71 | 0.998598 |
Target: 5'- ------cGCggUGGCCGcCGGCGGCGAg -3' miRNA: 3'- cuaaauaUGa-ACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 64709 | 0.74 | 0.989439 |
Target: 5'- ------cGCgcGGCCGUCGACAACGc -3' miRNA: 3'- cuaaauaUGaaCCGGCAGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 115841 | 1.11 | 0.028752 |
Target: 5'- gGAUUUAUACUUGGCCGUCAACAACGAg -3' miRNA: 3'- -CUAAAUAUGAACCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 53869 | 0.66 | 0.999998 |
Target: 5'- ----gGUGCUguggggcGGCCGUCucuccggaaAGCAGCGGc -3' miRNA: 3'- cuaaaUAUGAa------CCGGCAG---------UUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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