Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6672 | 3' | -44.2 | NC_001847.1 | + | 115841 | 1.11 | 0.028752 |
Target: 5'- gGAUUUAUACUUGGCCGUCAACAACGAg -3' miRNA: 3'- -CUAAAUAUGAACCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 11049 | 0.85 | 0.615358 |
Target: 5'- ---cUAUGCUUGGCCG-CAGCGGCGGc -3' miRNA: 3'- cuaaAUAUGAACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 58281 | 0.76 | 0.968412 |
Target: 5'- ---aUGUGCUcGGCCG-CGGCGACGGc -3' miRNA: 3'- cuaaAUAUGAaCCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 119247 | 0.75 | 0.974601 |
Target: 5'- ------cAUggGGCCGUCGAUAGCGAg -3' miRNA: 3'- cuaaauaUGaaCCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 85740 | 0.75 | 0.982159 |
Target: 5'- ------aGCUUGGCCGUCAGCcccGCGc -3' miRNA: 3'- cuaaauaUGAACCGGCAGUUGu--UGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 64709 | 0.74 | 0.989439 |
Target: 5'- ------cGCgcGGCCGUCGACAACGc -3' miRNA: 3'- cuaaauaUGaaCCGGCAGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 119127 | 0.72 | 0.996439 |
Target: 5'- ------cAUggGGCCGUCGAUGGCGAg -3' miRNA: 3'- cuaaauaUGaaCCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 108541 | 0.72 | 0.997505 |
Target: 5'- ------cACgUGGCCGUCAGCAagcuuaACGAa -3' miRNA: 3'- cuaaauaUGaACCGGCAGUUGU------UGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 33221 | 0.71 | 0.997929 |
Target: 5'- uGAUggcgAUGC-UGGCCGagugcggcuUCGACGACGAc -3' miRNA: 3'- -CUAaa--UAUGaACCGGC---------AGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 121475 | 0.71 | 0.998291 |
Target: 5'- ----cGUACUcGGCCaUCAGCAGCGu -3' miRNA: 3'- cuaaaUAUGAaCCGGcAGUUGUUGCu -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 34461 | 0.71 | 0.998598 |
Target: 5'- ------cGCggUGGCCGcCGGCGGCGAg -3' miRNA: 3'- cuaaauaUGa-ACCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 19287 | 0.71 | 0.999074 |
Target: 5'- ---cUGUGCggcgGGCCGcCAACAAaCGAg -3' miRNA: 3'- cuaaAUAUGaa--CCGGCaGUUGUU-GCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 59233 | 0.71 | 0.999074 |
Target: 5'- ------cGCgucGGCCGUCGGCGAUGGc -3' miRNA: 3'- cuaaauaUGaa-CCGGCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 123448 | 0.7 | 0.999404 |
Target: 5'- gGGUUUGccggGCUUGGCC--CGGCGACGGc -3' miRNA: 3'- -CUAAAUa---UGAACCGGcaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 89783 | 0.7 | 0.999404 |
Target: 5'- ----cGUACgaGGCCGUCAucGCGcugGCGAa -3' miRNA: 3'- cuaaaUAUGaaCCGGCAGU--UGU---UGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 126447 | 0.7 | 0.999627 |
Target: 5'- ------aGCcgUGGCCGUCGGCAucguCGAc -3' miRNA: 3'- cuaaauaUGa-ACCGGCAGUUGUu---GCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 20881 | 0.69 | 0.999708 |
Target: 5'- cGAUaUGUACUUcGGCUGg--GCAGCGAg -3' miRNA: 3'- -CUAaAUAUGAA-CCGGCaguUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 21389 | 0.69 | 0.999825 |
Target: 5'- ----------cGGCuCGUCAGCGACGAu -3' miRNA: 3'- cuaaauaugaaCCG-GCAGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 116073 | 0.69 | 0.999867 |
Target: 5'- ------aGCggGGCCGaCGACGGCGAc -3' miRNA: 3'- cuaaauaUGaaCCGGCaGUUGUUGCU- -5' |
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6672 | 3' | -44.2 | NC_001847.1 | + | 110153 | 0.69 | 0.999899 |
Target: 5'- cGAUg---GCcaUGGCCaUCAACAGCGAc -3' miRNA: 3'- -CUAaauaUGa-ACCGGcAGUUGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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