miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 88174 0.67 0.703446
Target:  5'- -uGCCUgCUGCGCuUGGCCcGGGCg--- -3'
miRNA:   3'- gcCGGA-GAUGCG-ACCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 64060 0.67 0.703446
Target:  5'- -cGCCUCUggccGCGCcGGCCGAGcGCc--- -3'
miRNA:   3'- gcCGGAGA----UGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 28575 0.67 0.703446
Target:  5'- aCGGCgccgGgGCUGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGgagaUgCGACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 45835 0.67 0.703446
Target:  5'- gGGCCacucgCUGgGCggcacGGCCGAGGCc--- -3'
miRNA:   3'- gCCGGa----GAUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 13437 0.67 0.693443
Target:  5'- gGGCCU--GCGCUGGCUGuaucuagcGGGCg--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGC--------UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30991 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 33575 0.67 0.693443
Target:  5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3'
miRNA:   3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 57756 0.67 0.693443
Target:  5'- uCGGC----GCGCUGGCCacGGGGCUGcUGg -3'
miRNA:   3'- -GCCGgagaUGCGACCGG--CUCCGAU-AC- -5'
6673 3' -58.8 NC_001847.1 + 133804 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 70535 0.67 0.693443
Target:  5'- gCGGCgUgCUgGCGCUGGCCGAcucggaGGCg--- -3'
miRNA:   3'- -GCCGgA-GA-UGCGACCGGCU------CCGauac -5'
6673 3' -58.8 NC_001847.1 + 34595 0.67 0.68339
Target:  5'- aGGCCcggGCGCUGGCgCGGcGGCg--- -3'
miRNA:   3'- gCCGGagaUGCGACCG-GCU-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 51921 0.67 0.68339
Target:  5'- aCGGgCUCacgGCGaucgUGGCCGGGGCg--- -3'
miRNA:   3'- -GCCgGAGa--UGCg---ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 69332 0.67 0.68339
Target:  5'- gGGCCUCggGCGCU-GCUGGcGGCgcugGUGc -3'
miRNA:   3'- gCCGGAGa-UGCGAcCGGCU-CCGa---UAC- -5'
6673 3' -58.8 NC_001847.1 + 87743 0.67 0.68339
Target:  5'- aCGGCCgUCUACGaCgugcGGCuCGAcGGCUAc- -3'
miRNA:   3'- -GCCGG-AGAUGC-Ga---CCG-GCU-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 121559 0.67 0.68339
Target:  5'- gGGCCUCUugGaaggUGGCCGAGu----- -3'
miRNA:   3'- gCCGGAGAugCg---ACCGGCUCcgauac -5'
6673 3' -58.8 NC_001847.1 + 6693 0.67 0.68339
Target:  5'- cCGGCCgg-GCGCgcgcgcagGGCCGAGcGCa--- -3'
miRNA:   3'- -GCCGGagaUGCGa-------CCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 29982 0.67 0.68339
Target:  5'- -cGCCUUcGCGC-GGCUGcaGGGCUAUGu -3'
miRNA:   3'- gcCGGAGaUGCGaCCGGC--UCCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 82083 0.67 0.682382
Target:  5'- uCGGCgUCUgggccaaGCGCggGGCC-AGGCUcgGa -3'
miRNA:   3'- -GCCGgAGA-------UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 75647 0.67 0.673295
Target:  5'- gCGGCCUCgGCGCacccccugccGGCUGGGGaCUAc- -3'
miRNA:   3'- -GCCGGAGaUGCGa---------CCGGCUCC-GAUac -5'
6673 3' -58.8 NC_001847.1 + 87566 0.67 0.673295
Target:  5'- cCGGCCUUccucggcgcgUGCGC-GGCCGccGGGCUc-- -3'
miRNA:   3'- -GCCGGAG----------AUGCGaCCGGC--UCCGAuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.