miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 105034 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 100893 0.66 0.742771
Target:  5'- gCGGCCggCgggagACGg-GGUCGGGGCUcgGg -3'
miRNA:   3'- -GCCGGa-Ga----UGCgaCCGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 2221 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 39718 0.66 0.736956
Target:  5'- uGG-CUCUGCGCUGucgggccuuggcuccGCCGAGGaggAUGc -3'
miRNA:   3'- gCCgGAGAUGCGAC---------------CGGCUCCga-UAC- -5'
6673 3' -58.8 NC_001847.1 + 133403 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 118460 0.66 0.733061
Target:  5'- gCGGCCUCgugccugcgGCGCaaGGCCcGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--------UGCGa-CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 11296 0.66 0.733061
Target:  5'- gGGUCUCgGgGCcucagGGCCGGGGCa--- -3'
miRNA:   3'- gCCGGAGaUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30590 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 55508 0.66 0.733061
Target:  5'- gGGCC-CUGCuGCUGGCggcgcccgccgCGGGGCg--- -3'
miRNA:   3'- gCCGGaGAUG-CGACCG-----------GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 83040 0.66 0.733061
Target:  5'- gCGGCCgCUaguGCGCUugGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGaGA---UGCGA--CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 88828 0.66 0.733061
Target:  5'- gCGGCCgugCUGCGCUcGGCgCuacGGCUGg- -3'
miRNA:   3'- -GCCGGa--GAUGCGA-CCG-Gcu-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 93108 0.66 0.733061
Target:  5'- aCGaGCCagUCUACguaccgggcgaaGCUGGCCG-GGCUGc- -3'
miRNA:   3'- -GC-CGG--AGAUG------------CGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 53581 0.67 0.723263
Target:  5'- cCGGCCccgcgcagCUGCGCggGGCCGGcGaGCUcgGc -3'
miRNA:   3'- -GCCGGa-------GAUGCGa-CCGGCU-C-CGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 83095 0.67 0.722279
Target:  5'- aCGGCCUUcggGCGCgauaaugagccccUGGCgCGAGcGCUAg- -3'
miRNA:   3'- -GCCGGAGa--UGCG-------------ACCG-GCUC-CGAUac -5'
6673 3' -58.8 NC_001847.1 + 59237 0.67 0.713389
Target:  5'- uCGGCCgUCggcgaugGCGCcGGCCaGGGCcAUGa -3'
miRNA:   3'- -GCCGG-AGa------UGCGaCCGGcUCCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 36866 0.67 0.713389
Target:  5'- gCGGCCgagcUCUACGCggGGCUGcuGGCg--- -3'
miRNA:   3'- -GCCGG----AGAUGCGa-CCGGCu-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 70695 0.67 0.713389
Target:  5'- gGGCC-CgGgGCUGGCCGuGGCc--- -3'
miRNA:   3'- gCCGGaGaUgCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 68059 0.67 0.713389
Target:  5'- gCGGCCUCgcgGCGCgccugcGGC-GGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--UGCGa-----CCGgCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33242 0.67 0.713389
Target:  5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3'
miRNA:   3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 33030 0.67 0.710413
Target:  5'- cCGcCCUCUccgccgagcuggacGCGCUcgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCcGGAGA--------------UGCGA---CCGGCUCCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.