miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 27716 0.71 0.465104
Target:  5'- gGGCCgcccgCgccgaGCUGGCCGA-GCUGUGg -3'
miRNA:   3'- gCCGGa----Gaug--CGACCGGCUcCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 27910 0.66 0.752386
Target:  5'- cCGGCCgcgcUUGCGgaGGCCaGGGCg--- -3'
miRNA:   3'- -GCCGGa---GAUGCgaCCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 28247 0.68 0.642844
Target:  5'- -cGCCg--ACGCUgaggccgaGGCCGAGGCUGa- -3'
miRNA:   3'- gcCGGagaUGCGA--------CCGGCUCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 28575 0.67 0.703446
Target:  5'- aCGGCgccgGgGCUGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGgagaUgCGACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 28611 0.7 0.54192
Target:  5'- gCGGCCgcgcgCUACGCggcGGCCGcgGGGCc--- -3'
miRNA:   3'- -GCCGGa----GAUGCGa--CCGGC--UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 29360 0.72 0.420065
Target:  5'- gCGGCCcCggcgGCGCUGcgcGCCGAGGCg--- -3'
miRNA:   3'- -GCCGGaGa---UGCGAC---CGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 29462 0.69 0.592027
Target:  5'- gCGGCCgaaGCGCcgcccgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCCGGagaUGCGa------CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 29477 0.71 0.455892
Target:  5'- uCGGCCUggGCGCUGGCgCGcGcGCUGUu -3'
miRNA:   3'- -GCCGGAgaUGCGACCG-GCuC-CGAUAc -5'
6673 3' -58.8 NC_001847.1 + 29982 0.67 0.68339
Target:  5'- -cGCCUUcGCGC-GGCUGcaGGGCUAUGu -3'
miRNA:   3'- gcCGGAGaUGCGaCCGGC--UCCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 30196 0.68 0.623506
Target:  5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3'
miRNA:   3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5'
6673 3' -58.8 NC_001847.1 + 30400 0.68 0.642844
Target:  5'- aCGGCgCUg-GCGCUGGCCGccGGCa--- -3'
miRNA:   3'- -GCCG-GAgaUGCGACCGGCu-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 30590 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30779 0.69 0.592027
Target:  5'- uGGCCUCgcgGCGCgucuucGGCCcGGGCg--- -3'
miRNA:   3'- gCCGGAGa--UGCGa-----CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30991 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 31165 0.68 0.642844
Target:  5'- uGGCCuUCUGCGC-GGCCGc-GCUGc- -3'
miRNA:   3'- gCCGG-AGAUGCGaCCGGCucCGAUac -5'
6673 3' -58.8 NC_001847.1 + 32096 0.69 0.581921
Target:  5'- gGGCgUCgggGCGCgaGGCCcGGGCUcgGg -3'
miRNA:   3'- gCCGgAGa--UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 32207 0.66 0.771292
Target:  5'- aGGCC-CgcggGCGg-GGCCGGGGCg--- -3'
miRNA:   3'- gCCGGaGa---UGCgaCCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33010 0.67 0.673295
Target:  5'- gCGGCCgggggGCGCgcgGGgCGAGGCg--- -3'
miRNA:   3'- -GCCGGaga--UGCGa--CCgGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33030 0.67 0.710413
Target:  5'- cCGcCCUCUccgccgagcuggacGCGCUcgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCcGGAGA--------------UGCGA---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33242 0.67 0.713389
Target:  5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3'
miRNA:   3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.