miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 945 0.66 0.742771
Target:  5'- uCGGCCcgcgcgcgccgcUCcACGCUGcGCCGGGcGuCUAUGc -3'
miRNA:   3'- -GCCGG------------AGaUGCGAC-CGGCUC-C-GAUAC- -5'
6673 3' -58.8 NC_001847.1 + 2221 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 2542 0.68 0.612317
Target:  5'- gCGGCgCUCccgcCGCcgGGCCGGGGCg--- -3'
miRNA:   3'- -GCCG-GAGau--GCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 6693 0.67 0.68339
Target:  5'- cCGGCCgg-GCGCgcgcgcagGGCCGAGcGCa--- -3'
miRNA:   3'- -GCCGGagaUGCGa-------CCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 7220 0.68 0.632666
Target:  5'- gGGCCguccauggcgCUGCagcgGCUGGUCGGguGGCUGUGc -3'
miRNA:   3'- gCCGGa---------GAUG----CGACCGGCU--CCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 7772 0.68 0.653014
Target:  5'- aCGGCCg-UugGU--GCCGAGGCUcgGg -3'
miRNA:   3'- -GCCGGagAugCGacCGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 8473 0.66 0.752386
Target:  5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 10847 0.7 0.512527
Target:  5'- aCGGCg---GCGCgUGGCCGAGGCg--- -3'
miRNA:   3'- -GCCGgagaUGCG-ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 11195 0.66 0.771292
Target:  5'- uGGUCcgCgcgGgGCUGGUCGAGGUUGa- -3'
miRNA:   3'- gCCGGa-Ga--UgCGACCGGCUCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 11296 0.66 0.733061
Target:  5'- gGGUCUCgGgGCcucagGGCCGGGGCa--- -3'
miRNA:   3'- gCCGGAGaUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 11594 0.73 0.377768
Target:  5'- -uGCUUCUGCGCUGGCCGGcGCguccucgAUGg -3'
miRNA:   3'- gcCGGAGAUGCGACCGGCUcCGa------UAC- -5'
6673 3' -58.8 NC_001847.1 + 13437 0.67 0.693443
Target:  5'- gGGCCU--GCGCUGGCUGuaucuagcGGGCg--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGC--------UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 14145 0.75 0.262675
Target:  5'- cCGGCCggCUGCGCagcggcGGCCGGGGCg--- -3'
miRNA:   3'- -GCCGGa-GAUGCGa-----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 14936 0.68 0.642844
Target:  5'- aCGGCCUac-CGCUGGCU---GCUGUGg -3'
miRNA:   3'- -GCCGGAgauGCGACCGGcucCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 16681 0.66 0.752386
Target:  5'- gGGCCUUgcgcCGCaGGCaCGAGGCc--- -3'
miRNA:   3'- gCCGGAGau--GCGaCCG-GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 17327 0.71 0.44136
Target:  5'- aCGGCCgcguagccggcgccuUCUAgCGCUGGCUGGGGUUc-- -3'
miRNA:   3'- -GCCGG---------------AGAU-GCGACCGGCUCCGAuac -5'
6673 3' -58.8 NC_001847.1 + 21779 0.66 0.771292
Target:  5'- gGGCC-CgGCGCcGGCCGGGcGCg--- -3'
miRNA:   3'- gCCGGaGaUGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 25800 0.69 0.587981
Target:  5'- uCGGCCUCgagcugcuccgccGCGUcGGCCGggcAGGCUGUc -3'
miRNA:   3'- -GCCGGAGa------------UGCGaCCGGC---UCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 26509 0.66 0.742771
Target:  5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 27667 0.68 0.612317
Target:  5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.