miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 121353 0.66 0.761896
Target:  5'- uGGUUUCUGCGCggcGGgCGGGGUg--- -3'
miRNA:   3'- gCCGGAGAUGCGa--CCgGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 129322 0.66 0.742771
Target:  5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 135020 0.66 0.771292
Target:  5'- aGGCC-CgcggGCGg-GGCCGGGGCg--- -3'
miRNA:   3'- gCCGGaGa---UGCgaCCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 27910 0.66 0.752386
Target:  5'- cCGGCCgcgcUUGCGgaGGCCaGGGCg--- -3'
miRNA:   3'- -GCCGGa---GAUGCgaCCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 39718 0.66 0.736956
Target:  5'- uGG-CUCUGCGCUGucgggccuuggcuccGCCGAGGaggAUGc -3'
miRNA:   3'- gCCgGAGAUGCGAC---------------CGGCUCCga-UAC- -5'
6673 3' -58.8 NC_001847.1 + 83040 0.66 0.733061
Target:  5'- gCGGCCgCUaguGCGCUugGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGaGA---UGCGA--CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 34809 0.66 0.742771
Target:  5'- gCGGCCgcugGCGCggcaGGCCGAccgGGCgcUGg -3'
miRNA:   3'- -GCCGGaga-UGCGa---CCGGCU---CCGauAC- -5'
6673 3' -58.8 NC_001847.1 + 16681 0.66 0.752386
Target:  5'- gGGCCUUgcgcCGCaGGCaCGAGGCc--- -3'
miRNA:   3'- gCCGGAGau--GCGaCCG-GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 111286 0.66 0.752386
Target:  5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 88828 0.66 0.733061
Target:  5'- gCGGCCgugCUGCGCUcGGCgCuacGGCUGg- -3'
miRNA:   3'- -GCCGGa--GAUGCGA-CCG-Gcu-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 11195 0.66 0.771292
Target:  5'- uGGUCcgCgcgGgGCUGGUCGAGGUUGa- -3'
miRNA:   3'- gCCGGa-Ga--UgCGACCGGCUCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 133403 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 105034 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 93108 0.66 0.733061
Target:  5'- aCGaGCCagUCUACguaccgggcgaaGCUGGCCG-GGCUGc- -3'
miRNA:   3'- -GC-CGG--AGAUG------------CGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 97698 0.66 0.761896
Target:  5'- aGGCCcgcugCUGCGCUcgccgucgucGGCgGGGGCa--- -3'
miRNA:   3'- gCCGGa----GAUGCGA----------CCGgCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 55508 0.66 0.733061
Target:  5'- gGGCC-CUGCuGCUGGCggcgcccgccgCGGGGCg--- -3'
miRNA:   3'- gCCGGaGAUG-CGACCG-----------GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 945 0.66 0.742771
Target:  5'- uCGGCCcgcgcgcgccgcUCcACGCUGcGCCGGGcGuCUAUGc -3'
miRNA:   3'- -GCCGG------------AGaUGCGAC-CGGCUC-C-GAUAC- -5'
6673 3' -58.8 NC_001847.1 + 124592 0.66 0.771292
Target:  5'- gGGCC-CgGCGCcGGCCGGGcGCg--- -3'
miRNA:   3'- gCCGGaGaUGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 100893 0.66 0.742771
Target:  5'- gCGGCCggCgggagACGg-GGUCGGGGCUcgGg -3'
miRNA:   3'- -GCCGGa-Ga----UGCgaCCGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 34756 0.66 0.769423
Target:  5'- gCGGCCgagcuggcgcggCUGCGCgccgcGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGa-----------GAUGCGa----CCGGCuCCGauac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.