miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 11296 0.66 0.733061
Target:  5'- gGGUCUCgGgGCcucagGGCCGGGGCa--- -3'
miRNA:   3'- gCCGGAGaUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 88828 0.66 0.733061
Target:  5'- gCGGCCgugCUGCGCUcGGCgCuacGGCUGg- -3'
miRNA:   3'- -GCCGGa--GAUGCGA-CCG-Gcu-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 83040 0.66 0.733061
Target:  5'- gCGGCCgCUaguGCGCUugGGCCGcGGCg--- -3'
miRNA:   3'- -GCCGGaGA---UGCGA--CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 55508 0.66 0.733061
Target:  5'- gGGCC-CUGCuGCUGGCggcgcccgccgCGGGGCg--- -3'
miRNA:   3'- gCCGGaGAUG-CGACCG-----------GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 111088 0.66 0.752386
Target:  5'- gGGCCcggCUGCGCgagaaGGUCGcgcggcacGGGCUGUa -3'
miRNA:   3'- gCCGGa--GAUGCGa----CCGGC--------UCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 2221 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 21779 0.66 0.771292
Target:  5'- gGGCC-CgGCGCcGGCCGGGcGCg--- -3'
miRNA:   3'- gCCGGaGaUGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 30590 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 118460 0.66 0.733061
Target:  5'- gCGGCCUCgugccugcgGCGCaaGGCCcGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--------UGCGa-CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 26509 0.66 0.742771
Target:  5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 58273 0.66 0.752386
Target:  5'- aGGCCUCcaUGUGCUcGGCCGcGGCg--- -3'
miRNA:   3'- gCCGGAG--AUGCGA-CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 8473 0.66 0.752386
Target:  5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 51921 0.67 0.68339
Target:  5'- aCGGgCUCacgGCGaucgUGGCCGGGGCg--- -3'
miRNA:   3'- -GCCgGAGa--UGCg---ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 29982 0.67 0.68339
Target:  5'- -cGCCUUcGCGC-GGCUGcaGGGCUAUGu -3'
miRNA:   3'- gcCGGAGaUGCGaCCGGC--UCCGAUAC- -5'
6673 3' -58.8 NC_001847.1 + 13437 0.67 0.693443
Target:  5'- gGGCCU--GCGCUGGCUGuaucuagcGGGCg--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGC--------UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 133804 0.67 0.693443
Target:  5'- uGGCCgcgCaggGCGCgGcGCUGGGGCUcgGg -3'
miRNA:   3'- gCCGGa--Ga--UGCGaC-CGGCUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 45835 0.67 0.703446
Target:  5'- gGGCCacucgCUGgGCggcacGGCCGAGGCc--- -3'
miRNA:   3'- gCCGGa----GAUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33030 0.67 0.710413
Target:  5'- cCGcCCUCUccgccgagcuggacGCGCUcgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCcGGAGA--------------UGCGA---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 59237 0.67 0.713389
Target:  5'- uCGGCCgUCggcgaugGCGCcGGCCaGGGCcAUGa -3'
miRNA:   3'- -GCCGG-AGa------UGCGaCCGGcUCCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 36866 0.67 0.713389
Target:  5'- gCGGCCgagcUCUACGCggGGCUGcuGGCg--- -3'
miRNA:   3'- -GCCGG----AGAUGCGa-CCGGCu-CCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.