miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 53023 0.71 0.483812
Target:  5'- gCGGCCgCUGCGCgcucgGGCCucGGCUccGa -3'
miRNA:   3'- -GCCGGaGAUGCGa----CCGGcuCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 37556 0.7 0.49712
Target:  5'- gCGGCC-CUucggaagacgcggcgGCGCUGGCCGcugcGGCUGc- -3'
miRNA:   3'- -GCCGGaGA---------------UGCGACCGGCu---CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 10847 0.7 0.512527
Target:  5'- aCGGCg---GCGCgUGGCCGAGGCg--- -3'
miRNA:   3'- -GCCGgagaUGCG-ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 50103 0.7 0.532055
Target:  5'- uCGGCCagCUGCuggggGCcgGGCUGGGGCUGUc -3'
miRNA:   3'- -GCCGGa-GAUG-----CGa-CCGGCUCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 33333 0.7 0.539942
Target:  5'- aCGGCCUCgcggccugggugGCGCUGcuGCaCGAGGCg--- -3'
miRNA:   3'- -GCCGGAGa-----------UGCGAC--CG-GCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 131424 0.7 0.54192
Target:  5'- gCGGCCgcgcgCUACGCggcGGCCGcgGGGCc--- -3'
miRNA:   3'- -GCCGGa----GAUGCGa--CCGGC--UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 28611 0.7 0.54192
Target:  5'- gCGGCCgcgcgCUACGCggcGGCCGcgGGGCc--- -3'
miRNA:   3'- -GCCGGa----GAUGCGa--CCGGC--UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33975 0.69 0.551845
Target:  5'- gGcGCCgggcGCGCUGGCCG-GGCUGg- -3'
miRNA:   3'- gC-CGGaga-UGCGACCGGCuCCGAUac -5'
6673 3' -58.8 NC_001847.1 + 127077 0.69 0.551845
Target:  5'- gCGGugccccCCUCUGCGCgcgGGCCGcgcGGCUuUGg -3'
miRNA:   3'- -GCC------GGAGAUGCGa--CCGGCu--CCGAuAC- -5'
6673 3' -58.8 NC_001847.1 + 94745 0.69 0.561824
Target:  5'- gGGCUUUggGCGCgucuUGGCCGGGGCc--- -3'
miRNA:   3'- gCCGGAGa-UGCG----ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 62466 0.69 0.581921
Target:  5'- cCGGCCUCa--GCagGGCCGGGGUc--- -3'
miRNA:   3'- -GCCGGAGaugCGa-CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 32096 0.69 0.581921
Target:  5'- gGGCgUCgggGCGCgaGGCCcGGGCUcgGg -3'
miRNA:   3'- gCCGgAGa--UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 69252 0.69 0.581921
Target:  5'- uGGCCUaCUACGCgcGGCUGGcGGCg--- -3'
miRNA:   3'- gCCGGA-GAUGCGa-CCGGCU-CCGauac -5'
6673 3' -58.8 NC_001847.1 + 134909 0.69 0.581921
Target:  5'- gGGCgUCgggGCGCgaGGCCcGGGCUcgGg -3'
miRNA:   3'- gCCGgAGa--UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 25800 0.69 0.587981
Target:  5'- uCGGCCUCgagcugcuccgccGCGUcGGCCGggcAGGCUGUc -3'
miRNA:   3'- -GCCGGAGa------------UGCGaCCGGC---UCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 30779 0.69 0.592027
Target:  5'- uGGCCUCgcgGCGCgucuucGGCCcGGGCg--- -3'
miRNA:   3'- gCCGGAGa--UGCGa-----CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 133592 0.69 0.592027
Target:  5'- uGGCCUCgcgGCGCgucuucGGCCcGGGCg--- -3'
miRNA:   3'- gCCGGAGa--UGCGa-----CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 77654 0.69 0.592027
Target:  5'- aGGCCUUcgACGCggGcGCCGAGGUa--- -3'
miRNA:   3'- gCCGGAGa-UGCGa-C-CGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 37465 0.69 0.592027
Target:  5'- gGGCCU--GCGUUGGCCG-GGCc--- -3'
miRNA:   3'- gCCGGAgaUGCGACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 29462 0.69 0.592027
Target:  5'- gCGGCCgaaGCGCcgcccgcGGCCGAGGCg--- -3'
miRNA:   3'- -GCCGGagaUGCGa------CCGGCUCCGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.