miRNA display CGI


Results 41 - 60 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 41868 0.66 0.363335
Target:  5'- cCGCCgacauCGC-GGCGCgauacggCCCgCGCGGCGa- -3'
miRNA:   3'- -GCGG-----GCGaCCGCGa------GGG-GCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 128108 0.66 0.363335
Target:  5'- aGCCCaaacgacguggcGCUGGCGCUggcggaUgCGCGGcCGCUc -3'
miRNA:   3'- gCGGG------------CGACCGCGAg-----GgGCGCC-GCGA- -5'
6674 5' -68.1 NC_001847.1 + 1102 0.66 0.363335
Target:  5'- gCGgCCGCgggcGGCGC-CgCCGCGGC-CUc -3'
miRNA:   3'- -GCgGGCGa---CCGCGaGgGGCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 52239 0.66 0.363335
Target:  5'- aGCCCcCgGGCGCcgcgCgCCGCGGCuugGCUg -3'
miRNA:   3'- gCGGGcGaCCGCGa---GgGGCGCCG---CGA- -5'
6674 5' -68.1 NC_001847.1 + 43569 0.66 0.35592
Target:  5'- gCGCuucgCCGCgGGCGaCgcgcgCCCCagcGUGGCGCUg -3'
miRNA:   3'- -GCG----GGCGaCCGC-Ga----GGGG---CGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 14158 0.66 0.35592
Target:  5'- gCGgCCGCUagGGCGacggCCgcgcuuaCGCGGCGCUg -3'
miRNA:   3'- -GCgGGCGA--CCGCga--GGg------GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 102899 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 67301 0.66 0.35592
Target:  5'- gCGCgCGCgccaGCGCcggcagCCCCGCcGGCGUa -3'
miRNA:   3'- -GCGgGCGac--CGCGa-----GGGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 78022 0.66 0.35592
Target:  5'- gGCCa--UGGCGUcCCCCaacaugcgcgcgGCGGCGCg -3'
miRNA:   3'- gCGGgcgACCGCGaGGGG------------CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 114234 0.66 0.35592
Target:  5'- -cUCCGUguaGCGCUCgCCCGCGacGCGCUc -3'
miRNA:   3'- gcGGGCGac-CGCGAG-GGGCGC--CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 99173 0.66 0.35592
Target:  5'- gCGCgCGCcuUGGCGC-CCUCGUGGUccucGCg -3'
miRNA:   3'- -GCGgGCG--ACCGCGaGGGGCGCCG----CGa -5'
6674 5' -68.1 NC_001847.1 + 78247 0.66 0.35592
Target:  5'- cCGCCCGCcGGCGUcgCCgUCGcCGGCGn- -3'
miRNA:   3'- -GCGGGCGaCCGCGa-GG-GGC-GCCGCga -5'
6674 5' -68.1 NC_001847.1 + 74506 0.66 0.35592
Target:  5'- gCGCCUGCgccGcGCGCUggaCgagaCGCGGCGCUu -3'
miRNA:   3'- -GCGGGCGa--C-CGCGAg--Gg---GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 52910 0.66 0.35592
Target:  5'- gGUCCGCgGGCaGCggCUCGgGGCGCc -3'
miRNA:   3'- gCGGGCGaCCG-CGagGGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 86417 0.66 0.35592
Target:  5'- aGCUCGUggauuuguUGGCgGCgCUgCGCGGCGCg -3'
miRNA:   3'- gCGGGCG--------ACCG-CGaGGgGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 1027 0.66 0.35592
Target:  5'- cCGCCCGC-GGCGCg--CCGCaGCaGCa -3'
miRNA:   3'- -GCGGGCGaCCGCGaggGGCGcCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 22817 0.66 0.35592
Target:  5'- gGCCgGCggcGGcCGCUCCCCGCcgaGGUaGUUg -3'
miRNA:   3'- gCGGgCGa--CC-GCGAGGGGCG---CCG-CGA- -5'
6674 5' -68.1 NC_001847.1 + 15920 0.66 0.35592
Target:  5'- uGCCUGCcc-CGCcgCCCCGCGGUGg- -3'
miRNA:   3'- gCGGGCGaccGCGa-GGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 38679 0.66 0.35592
Target:  5'- cCGCCCGCaaGCcuGgUCUCCGCaGCGCc -3'
miRNA:   3'- -GCGGGCGacCG--CgAGGGGCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 86 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.