miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 1162 0.66 0.363335
Target:  5'- uGCCgCGC--GCGCUCCCagcccCGGCGCc -3'
miRNA:   3'- gCGG-GCGacCGCGAGGGgc---GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 74017 0.66 0.363335
Target:  5'- aCGCUgCGCcGGCGCgugCCgcuggcggaCGUGGCGCUg -3'
miRNA:   3'- -GCGG-GCGaCCGCGa--GGg--------GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 41868 0.66 0.363335
Target:  5'- cCGCCgacauCGC-GGCGCgauacggCCCgCGCGGCGa- -3'
miRNA:   3'- -GCGG-----GCGaCCGCGa------GGG-GCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 39471 0.66 0.363335
Target:  5'- gGCCCGCgc-CGCcCCCCGCGccagagcggcccGCGCc -3'
miRNA:   3'- gCGGGCGaccGCGaGGGGCGC------------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 59740 0.66 0.363335
Target:  5'- gGCCCGCga-UGCccgCCUCGCGGCGg- -3'
miRNA:   3'- gCGGGCGaccGCGa--GGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 39417 0.66 0.363335
Target:  5'- gGCCCGCgc-CGCcCCCCGCGccagagcggcccGCGCc -3'
miRNA:   3'- gCGGGCGaccGCGaGGGGCGC------------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 52390 0.66 0.363335
Target:  5'- aGCCCuuccgGCaaGCGCUCCagcgcggGCGGCGCg -3'
miRNA:   3'- gCGGG-----CGacCGCGAGGgg-----CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 98672 0.66 0.363335
Target:  5'- gCGCCCGCgcaGGUGCaggUCCcgcucacacagCCGCGccGCGCg -3'
miRNA:   3'- -GCGGGCGa--CCGCG---AGG-----------GGCGC--CGCGa -5'
6674 5' -68.1 NC_001847.1 + 43839 0.66 0.363335
Target:  5'- uGCCgCGCUGGCGCUgcuggagCCCGaGGCuGUg -3'
miRNA:   3'- gCGG-GCGACCGCGAg------GGGCgCCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 90738 0.66 0.363335
Target:  5'- cCGCUCGC-GGCGCguggccgggCCCCGgGaGCGg- -3'
miRNA:   3'- -GCGGGCGaCCGCGa--------GGGGCgC-CGCga -5'
6674 5' -68.1 NC_001847.1 + 128108 0.66 0.363335
Target:  5'- aGCCCaaacgacguggcGCUGGCGCUggcggaUgCGCGGcCGCUc -3'
miRNA:   3'- gCGGG------------CGACCGCGAg-----GgGCGCC-GCGA- -5'
6674 5' -68.1 NC_001847.1 + 57024 0.66 0.363335
Target:  5'- gCGCCCGCuuuUGGCGC-CCgCGUccaagaGGCGg- -3'
miRNA:   3'- -GCGGGCG---ACCGCGaGGgGCG------CCGCga -5'
6674 5' -68.1 NC_001847.1 + 119896 0.66 0.363335
Target:  5'- uCGCgUGCgUGGcCGCcgCCgCCGcCGGCGCg -3'
miRNA:   3'- -GCGgGCG-ACC-GCGa-GG-GGC-GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 103915 0.66 0.363335
Target:  5'- gCGgCCGCgggcGGCGC-CgCCGCGGC-CUc -3'
miRNA:   3'- -GCgGGCGa---CCGCGaGgGGCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 129323 0.66 0.363335
Target:  5'- gGCCUGCcgGGCGCggggCCgGgGGCGUUc -3'
miRNA:   3'- gCGGGCGa-CCGCGag--GGgCgCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 119820 0.66 0.363335
Target:  5'- cCGCCCGCcccCGCUacgCCCGCGGCc-- -3'
miRNA:   3'- -GCGGGCGaccGCGAg--GGGCGCCGcga -5'
6674 5' -68.1 NC_001847.1 + 88907 0.66 0.363335
Target:  5'- -aCCCGaggcaCUGGUGCgagauuUCCCCGCGGCcgGCc -3'
miRNA:   3'- gcGGGC-----GACCGCG------AGGGGCGCCG--CGa -5'
6674 5' -68.1 NC_001847.1 + 104771 0.66 0.363335
Target:  5'- gCGCCCGCaccaGCGCcgagggCCCgccagcaacgCGCGGUGCUc -3'
miRNA:   3'- -GCGGGCGac--CGCGa-----GGG----------GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 52239 0.66 0.363335
Target:  5'- aGCCCcCgGGCGCcgcgCgCCGCGGCuugGCUg -3'
miRNA:   3'- gCGGGcGaCCGCGa---GgGGCGCCG---CGA- -5'
6674 5' -68.1 NC_001847.1 + 83729 0.66 0.363335
Target:  5'- aGCCCGC---CGCUCaCUCG-GGCGCUa -3'
miRNA:   3'- gCGGGCGaccGCGAG-GGGCgCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.