miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 3884 0.7 0.195994
Target:  5'- gGCCCGUc-GCGCggCgCCGCGGCGUa -3'
miRNA:   3'- gCGGGCGacCGCGa-GgGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 3920 0.69 0.240892
Target:  5'- gCGCCgGUUGcGCGC-CCgCGCuGGCGCc -3'
miRNA:   3'- -GCGGgCGAC-CGCGaGGgGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 3981 0.73 0.113096
Target:  5'- gCGCCggggGCcgGGCGCgcggCCCCGCGGgGCg -3'
miRNA:   3'- -GCGGg---CGa-CCGCGa---GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 4171 0.66 0.348612
Target:  5'- gGCCCGCUGuccuCGgaCCCgGCGuCGCUg -3'
miRNA:   3'- gCGGGCGACc---GCgaGGGgCGCcGCGA- -5'
6674 5' -68.1 NC_001847.1 + 4392 0.67 0.313696
Target:  5'- gCGCgCCGCggcccaGGCGCUgUCCGCGuccuccGCGCc -3'
miRNA:   3'- -GCG-GGCGa-----CCGCGAgGGGCGC------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 4462 0.73 0.110362
Target:  5'- aCGUCCGCguccucGGCGCcCCCCGCgucccuGGCGCc -3'
miRNA:   3'- -GCGGGCGa-----CCGCGaGGGGCG------CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 4617 0.69 0.210085
Target:  5'- gGCCaGCUcGGCGCgggcggCCCGcCGGCGCUc -3'
miRNA:   3'- gCGGgCGA-CCGCGag----GGGC-GCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 4926 0.66 0.370856
Target:  5'- gGgCCGCc-GCGCUUCCCGCGcccuccGCGCc -3'
miRNA:   3'- gCgGGCGacCGCGAGGGGCGC------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 5023 0.68 0.259969
Target:  5'- uCGCgCGCgagGGCGCUCucguacucgucccagCCCGCGuCGCg -3'
miRNA:   3'- -GCGgGCGa--CCGCGAG---------------GGGCGCcGCGa -5'
6674 5' -68.1 NC_001847.1 + 5443 0.66 0.34428
Target:  5'- gCGUCuCGCUccacaagcgcgucccGGcCGCUCUCUGCGGCGg- -3'
miRNA:   3'- -GCGG-GCGA---------------CC-GCGAGGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 6089 0.73 0.118755
Target:  5'- gCGCUCGCggaGGCGCgagacgCCCgcgaggCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa--CCGCGa-----GGG------GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 6358 0.69 0.225042
Target:  5'- cCGCgCCGCgGGCGUagCCgCUGCGGCaGCa -3'
miRNA:   3'- -GCG-GGCGaCCGCGa-GG-GGCGCCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 8065 0.69 0.230224
Target:  5'- gGCCCGCgcgcagaggGGgGCaCCgCCGCGGCGa- -3'
miRNA:   3'- gCGGGCGa--------CCgCGaGG-GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 8112 0.7 0.178495
Target:  5'- gCGCCagCGCaGGCGCggggCCCCaggggcggGCGGUGCUg -3'
miRNA:   3'- -GCGG--GCGaCCGCGa---GGGG--------CGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 9737 0.68 0.246378
Target:  5'- uGCCaCGCgaccgGGCGggcccugCCCCGgGGCGCc -3'
miRNA:   3'- gCGG-GCGa----CCGCga-----GGGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 9809 0.71 0.162396
Target:  5'- cCGgCCGCUGGCGUUCagCGCGGCu-- -3'
miRNA:   3'- -GCgGGCGACCGCGAGggGCGCCGcga -5'
6674 5' -68.1 NC_001847.1 + 9940 0.66 0.328031
Target:  5'- aCGCUCGCcgcggcccgGGCGCcuucugCCCCGaggacugggccccgaGGCGCUg -3'
miRNA:   3'- -GCGGGCGa--------CCGCGa-----GGGGCg--------------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 10066 0.68 0.263461
Target:  5'- gGCCgCGCgGGCccaGCgCCCCGCcGCGCg -3'
miRNA:   3'- gCGG-GCGaCCG---CGaGGGGCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 10225 0.71 0.154847
Target:  5'- gCGCCCGCUGuCGC-CCCCG-GcGCGCc -3'
miRNA:   3'- -GCGGGCGACcGCGaGGGGCgC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 10385 0.67 0.323199
Target:  5'- cCGCUCGCggcggGGcCGCUuuaugacggcccgucCCCCGCGcgguucGCGCUg -3'
miRNA:   3'- -GCGGGCGa----CC-GCGA---------------GGGGCGC------CGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.