Results 21 - 40 of 620 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6674 | 5' | -68.1 | NC_001847.1 | + | 3884 | 0.7 | 0.195994 |
Target: 5'- gGCCCGUc-GCGCggCgCCGCGGCGUa -3' miRNA: 3'- gCGGGCGacCGCGa-GgGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 3920 | 0.69 | 0.240892 |
Target: 5'- gCGCCgGUUGcGCGC-CCgCGCuGGCGCc -3' miRNA: 3'- -GCGGgCGAC-CGCGaGGgGCG-CCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 3981 | 0.73 | 0.113096 |
Target: 5'- gCGCCggggGCcgGGCGCgcggCCCCGCGGgGCg -3' miRNA: 3'- -GCGGg---CGa-CCGCGa---GGGGCGCCgCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 4171 | 0.66 | 0.348612 |
Target: 5'- gGCCCGCUGuccuCGgaCCCgGCGuCGCUg -3' miRNA: 3'- gCGGGCGACc---GCgaGGGgCGCcGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 4392 | 0.67 | 0.313696 |
Target: 5'- gCGCgCCGCggcccaGGCGCUgUCCGCGuccuccGCGCc -3' miRNA: 3'- -GCG-GGCGa-----CCGCGAgGGGCGC------CGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 4462 | 0.73 | 0.110362 |
Target: 5'- aCGUCCGCguccucGGCGCcCCCCGCgucccuGGCGCc -3' miRNA: 3'- -GCGGGCGa-----CCGCGaGGGGCG------CCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 4617 | 0.69 | 0.210085 |
Target: 5'- gGCCaGCUcGGCGCgggcggCCCGcCGGCGCUc -3' miRNA: 3'- gCGGgCGA-CCGCGag----GGGC-GCCGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 4926 | 0.66 | 0.370856 |
Target: 5'- gGgCCGCc-GCGCUUCCCGCGcccuccGCGCc -3' miRNA: 3'- gCgGGCGacCGCGAGGGGCGC------CGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 5023 | 0.68 | 0.259969 |
Target: 5'- uCGCgCGCgagGGCGCUCucguacucgucccagCCCGCGuCGCg -3' miRNA: 3'- -GCGgGCGa--CCGCGAG---------------GGGCGCcGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 5443 | 0.66 | 0.34428 |
Target: 5'- gCGUCuCGCUccacaagcgcgucccGGcCGCUCUCUGCGGCGg- -3' miRNA: 3'- -GCGG-GCGA---------------CC-GCGAGGGGCGCCGCga -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 6089 | 0.73 | 0.118755 |
Target: 5'- gCGCUCGCggaGGCGCgagacgCCCgcgaggCGCGGCGCg -3' miRNA: 3'- -GCGGGCGa--CCGCGa-----GGG------GCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 6358 | 0.69 | 0.225042 |
Target: 5'- cCGCgCCGCgGGCGUagCCgCUGCGGCaGCa -3' miRNA: 3'- -GCG-GGCGaCCGCGa-GG-GGCGCCG-CGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 8065 | 0.69 | 0.230224 |
Target: 5'- gGCCCGCgcgcagaggGGgGCaCCgCCGCGGCGa- -3' miRNA: 3'- gCGGGCGa--------CCgCGaGG-GGCGCCGCga -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 8112 | 0.7 | 0.178495 |
Target: 5'- gCGCCagCGCaGGCGCggggCCCCaggggcggGCGGUGCUg -3' miRNA: 3'- -GCGG--GCGaCCGCGa---GGGG--------CGCCGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 9737 | 0.68 | 0.246378 |
Target: 5'- uGCCaCGCgaccgGGCGggcccugCCCCGgGGCGCc -3' miRNA: 3'- gCGG-GCGa----CCGCga-----GGGGCgCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 9809 | 0.71 | 0.162396 |
Target: 5'- cCGgCCGCUGGCGUUCagCGCGGCu-- -3' miRNA: 3'- -GCgGGCGACCGCGAGggGCGCCGcga -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 9940 | 0.66 | 0.328031 |
Target: 5'- aCGCUCGCcgcggcccgGGCGCcuucugCCCCGaggacugggccccgaGGCGCUg -3' miRNA: 3'- -GCGGGCGa--------CCGCGa-----GGGGCg--------------CCGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 10066 | 0.68 | 0.263461 |
Target: 5'- gGCCgCGCgGGCccaGCgCCCCGCcGCGCg -3' miRNA: 3'- gCGG-GCGaCCG---CGaGGGGCGcCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 10225 | 0.71 | 0.154847 |
Target: 5'- gCGCCCGCUGuCGC-CCCCG-GcGCGCc -3' miRNA: 3'- -GCGGGCGACcGCGaGGGGCgC-CGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 10385 | 0.67 | 0.323199 |
Target: 5'- cCGCUCGCggcggGGcCGCUuuaugacggcccgucCCCCGCGcgguucGCGCUg -3' miRNA: 3'- -GCGGGCGa----CC-GCGA---------------GGGGCGC------CGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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