miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 86 0.66 0.35592
Target:  5'- gGCCCGCUcugGGCuccGC-CCCUGggucCGGCGCc -3'
miRNA:   3'- gCGGGCGA---CCG---CGaGGGGC----GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 291 0.79 0.045318
Target:  5'- aGCCCGCgcgGGCGCcgUCCCCGCGccccgccggagcuucGCGCUc -3'
miRNA:   3'- gCGGGCGa--CCGCG--AGGGGCGC---------------CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 598 0.69 0.230224
Target:  5'- gGCCCuccGC-GGcCGCUCCgCaGCGGCGCg -3'
miRNA:   3'- gCGGG---CGaCC-GCGAGGgG-CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 887 0.69 0.230224
Target:  5'- gGCCCGCgccGGgGC-CgCCGCGGcCGCc -3'
miRNA:   3'- gCGGGCGa--CCgCGaGgGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 979 0.68 0.269365
Target:  5'- gGCCgGC-GGgGCuUCCgCCGCGGCGg- -3'
miRNA:   3'- gCGGgCGaCCgCG-AGG-GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 1027 0.66 0.35592
Target:  5'- cCGCCCGC-GGCGCg--CCGCaGCaGCa -3'
miRNA:   3'- -GCGGGCGaCCGCGaggGGCGcCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 1102 0.66 0.363335
Target:  5'- gCGgCCGCgggcGGCGC-CgCCGCGGC-CUc -3'
miRNA:   3'- -GCgGGCGa---CCGCGaGgGGCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 1162 0.66 0.363335
Target:  5'- uGCCgCGC--GCGCUCCCagcccCGGCGCc -3'
miRNA:   3'- gCGG-GCGacCGCGAGGGgc---GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 1253 0.69 0.214973
Target:  5'- cCGgCCGCagcGGCGCgccgagCCCCcagcgguugGCGGCGCg -3'
miRNA:   3'- -GCgGGCGa--CCGCGa-----GGGG---------CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 1513 0.71 0.158581
Target:  5'- gGCCCGUUGuGUuCcCCCCGCGcGCGCUu -3'
miRNA:   3'- gCGGGCGAC-CGcGaGGGGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 1592 0.67 0.306379
Target:  5'- gCGCgCCGCUcgggccagcgcgcGGCGCacugCgCCGCGGCaGCa -3'
miRNA:   3'- -GCG-GGCGA-------------CCGCGa---GgGGCGCCG-CGa -5'
6674 5' -68.1 NC_001847.1 + 1921 0.7 0.191037
Target:  5'- aGCCCGCcgcGGCGCggcggCCacucgggCCGcCGGCGCUc -3'
miRNA:   3'- gCGGGCGa--CCGCGa----GG-------GGC-GCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 2061 0.7 0.195994
Target:  5'- aCGCgCCGCcgcagcggUGGCgGCgagcgCCCCGCGGgGCc -3'
miRNA:   3'- -GCG-GGCG--------ACCG-CGa----GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 2326 0.67 0.307039
Target:  5'- aCGCCCGCU-GCGCggaaCCCGCcguuuugcacgGGcCGCa -3'
miRNA:   3'- -GCGGGCGAcCGCGag--GGGCG-----------CC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 2420 0.67 0.313696
Target:  5'- -cCCCGa-GGgGCcCCCCGCGGCGg- -3'
miRNA:   3'- gcGGGCgaCCgCGaGGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 2766 0.73 0.115893
Target:  5'- gCGCCgGCgccGGCGC-CCCCGCcGGCGg- -3'
miRNA:   3'- -GCGGgCGa--CCGCGaGGGGCG-CCGCga -5'
6674 5' -68.1 NC_001847.1 + 3002 0.67 0.281493
Target:  5'- aGCCgCGC--GCGCUCCaCCGCGuCGCg -3'
miRNA:   3'- gCGG-GCGacCGCGAGG-GGCGCcGCGa -5'
6674 5' -68.1 NC_001847.1 + 3117 0.66 0.334321
Target:  5'- gGCCCGCcgcGGCcgagaGCaccgggagCCCgGCGGCGCc -3'
miRNA:   3'- gCGGGCGa--CCG-----CGa-------GGGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 3237 0.7 0.178495
Target:  5'- cCGCCCGCgccGUGCUCgCCgGCGGCa-- -3'
miRNA:   3'- -GCGGGCGac-CGCGAG-GGgCGCCGcga -5'
6674 5' -68.1 NC_001847.1 + 3594 0.66 0.355184
Target:  5'- gGCCCGCgagcuucGCGCUCUgcagCCaggccauggcgucGCGGCGCg -3'
miRNA:   3'- gCGGGCGac-----CGCGAGG----GG-------------CGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.