miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 135021 0.68 0.275376
Target:  5'- gGCCCGCgGGCGggg-CCGgGGCGCg -3'
miRNA:   3'- gCGGGCGaCCGCgaggGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 134862 0.66 0.370856
Target:  5'- gCGCCCGCgcgGGCucgGCggCCCC-CGG-GCUc -3'
miRNA:   3'- -GCGGGCGa--CCG---CGa-GGGGcGCCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 134780 0.74 0.100034
Target:  5'- gGCgCGCggGGCGggCCCCGgGGCGCg -3'
miRNA:   3'- gCGgGCGa-CCGCgaGGGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 134579 0.67 0.30049
Target:  5'- gCGCCggagacgcggCGCUGGCGUccgccgccacguUCCCCGCGucGgGCa -3'
miRNA:   3'- -GCGG----------GCGACCGCG------------AGGGGCGC--CgCGa -5'
6674 5' -68.1 NC_001847.1 + 134186 0.7 0.178495
Target:  5'- gGCCCggguGCcGGCGCagucgUCCCCG-GGCGCg -3'
miRNA:   3'- gCGGG----CGaCCGCG-----AGGGGCgCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 134097 0.7 0.191483
Target:  5'- gGCCCGCgGGagaCGCUCgugcugCUGCGGCGCg -3'
miRNA:   3'- gCGGGCGaCC---GCGAGg-----GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 134019 0.71 0.151193
Target:  5'- gCGCcgCCGCUGGUGCUggaggCCgCgGCGGCGCc -3'
miRNA:   3'- -GCG--GGCGACCGCGA-----GG-GgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133938 0.67 0.28709
Target:  5'- gCGCUggaGCUGGCGC-CCgacgagcugccggCCGCGGCGgUg -3'
miRNA:   3'- -GCGGg--CGACCGCGaGG-------------GGCGCCGCgA- -5'
6674 5' -68.1 NC_001847.1 + 133666 0.66 0.348612
Target:  5'- gCGCcgCCGCUGcG-GCUCUgCCGCGGCGg- -3'
miRNA:   3'- -GCG--GGCGAC-CgCGAGG-GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 133612 0.66 0.348612
Target:  5'- gGCCCG--GGCGC-CUUCGCGcGCGCc -3'
miRNA:   3'- gCGGGCgaCCGCGaGGGGCGC-CGCGa -5'
6674 5' -68.1 NC_001847.1 + 133570 0.8 0.0346
Target:  5'- gGCgCGCUGGCGCgcgccgugcuggCCUCGCGGCGCg -3'
miRNA:   3'- gCGgGCGACCGCGa-----------GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133521 0.71 0.151193
Target:  5'- gCGCgCCGC-GGUGC-UgCCGCGGCGCa -3'
miRNA:   3'- -GCG-GGCGaCCGCGaGgGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133264 0.66 0.348612
Target:  5'- uCGUgaUGUUGGCGCgucuaagCCgCGCGGUGCg -3'
miRNA:   3'- -GCGg-GCGACCGCGa------GGgGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133231 0.69 0.21448
Target:  5'- cCGCgCCGCggcgGGCuCUCgcacgcgCUCGCGGCGCUg -3'
miRNA:   3'- -GCG-GGCGa---CCGcGAG-------GGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 133195 0.68 0.257662
Target:  5'- uGCCCucGCUGGaggaGCUCUgCGCcGCGCg -3'
miRNA:   3'- gCGGG--CGACCg---CGAGGgGCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133143 0.66 0.341413
Target:  5'- gCGCgUGgUGGUGCUCuacgaCCCGCugcccggggaGGCGCUg -3'
miRNA:   3'- -GCGgGCgACCGCGAG-----GGGCG----------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 133050 0.77 0.059252
Target:  5'- gGCCCGCcgccGCGCgggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCGac--CGCGa--GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 132998 0.7 0.195994
Target:  5'- aGCCCugGCgcccGGCGCUcgccuucgaCCCCGaGGCGCUg -3'
miRNA:   3'- gCGGG--CGa---CCGCGA---------GGGGCgCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 132959 0.69 0.225042
Target:  5'- gCGCCCGCa--CGCcgCCCagGCGGCGCg -3'
miRNA:   3'- -GCGGGCGaccGCGa-GGGg-CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 132913 0.71 0.151918
Target:  5'- aCGCCCGCgcccagcgccgcGGCGCUggcggccuacugccgCCCCgaggucGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa-----------CCGCGA---------------GGGG------CGCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.