miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 50039 0.76 0.076909
Target:  5'- aGCCCGCggGGCGCgguggcggccgcgggUCCgCgCGCGGCGCg -3'
miRNA:   3'- gCGGGCGa-CCGCG---------------AGG-G-GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 43124 0.77 0.062311
Target:  5'- uGCCCGCagacGGCGCgggCCCGCGgGCGCUg -3'
miRNA:   3'- gCGGGCGa---CCGCGag-GGGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 102774 0.76 0.067188
Target:  5'- aCGCCCGCgacgccGGCGCcCCCCGCgcgGGgGCUg -3'
miRNA:   3'- -GCGGGCGa-----CCGCGaGGGGCG---CCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 83485 0.76 0.067188
Target:  5'- cCGCCCuguuGCgGGCGCagCgCCGCGGCGCUg -3'
miRNA:   3'- -GCGGG----CGaCCGCGa-GgGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 94224 0.76 0.070642
Target:  5'- aGCUCGCggcggGGCGC-CCgCGCGGCGCc -3'
miRNA:   3'- gCGGGCGa----CCGCGaGGgGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 106801 0.76 0.070642
Target:  5'- gGCCCG--GGCGCgcggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCgaCCGCGa---GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 65917 0.76 0.072432
Target:  5'- uCGCCguCGCggcgucGGCGUUCCCCGCGGaCGCc -3'
miRNA:   3'- -GCGG--GCGa-----CCGCGAGGGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 66351 0.76 0.074266
Target:  5'- gGCgCCGCcgUGGCGaucgUCCCCGUGGCGCc -3'
miRNA:   3'- gCG-GGCG--ACCGCg---AGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 68072 0.76 0.076145
Target:  5'- gCGCCUGCggcggGGCGaaCgCCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa----CCGCgaGgGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 121728 0.77 0.061843
Target:  5'- gCGCgCGCUGGCGCgccCgucuuucucccgggCCCGCGGCGCg -3'
miRNA:   3'- -GCGgGCGACCGCGa--G--------------GGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133050 0.77 0.059252
Target:  5'- gGCCCGCcgccGCGCgggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCGac--CGCGa--GGGGCGCCgCGa -5'
6674 5' -68.1 NC_001847.1 + 32284 0.77 0.057777
Target:  5'- cCGUCCGCgUGGCGCggCCCCGCGaCGCc -3'
miRNA:   3'- -GCGGGCG-ACCGCGa-GGGGCGCcGCGa -5'
6674 5' -68.1 NC_001847.1 + 60809 0.82 0.026247
Target:  5'- gCGCCCGCcagacacacugaUGGCGCgaggggCgCCCGCGGCGCUg -3'
miRNA:   3'- -GCGGGCG------------ACCGCGa-----G-GGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 46597 0.81 0.032212
Target:  5'- aGcCCCGCcGGCGCggCCUCGCGGCGCa -3'
miRNA:   3'- gC-GGGCGaCCGCGa-GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133570 0.8 0.0346
Target:  5'- gGCgCGCUGGCGCgcgccgugcuggCCUCGCGGCGCg -3'
miRNA:   3'- gCGgGCGACCGCGa-----------GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 120783 0.8 0.037543
Target:  5'- cCGCgCGCUggcGGCGUUCCCCGCaGGCGCc -3'
miRNA:   3'- -GCGgGCGA---CCGCGAGGGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 101377 0.79 0.043735
Target:  5'- uGCgCCGCgGGgGCUgCCCGCGGCGCc -3'
miRNA:   3'- gCG-GGCGaCCgCGAgGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 103104 0.79 0.045318
Target:  5'- aGCCCGCgcgGGCGCcgUCCCCGCGccccgccggagcuucGCGCUc -3'
miRNA:   3'- gCGGGCGa--CCGCG--AGGGGCGC---------------CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 82876 0.78 0.053563
Target:  5'- uCGCCCGUgcgGGCGCgccgcagCCaagCCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa--CCGCGa------GG---GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 62147 0.77 0.056338
Target:  5'- gCGCCCGCgcugcGGCcaGCUCCCgCGCGGgCGCg -3'
miRNA:   3'- -GCGGGCGa----CCG--CGAGGG-GCGCC-GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.