miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 24130 0.66 0.334321
Target:  5'- aGCCCGCgcgcgaacuugcUGcGCGCaaagUCCUCGaaCGGCGCg -3'
miRNA:   3'- gCGGGCG------------AC-CGCG----AGGGGC--GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 75934 0.66 0.334321
Target:  5'- gGCgCCGCcGuGCGCcgCCacaCGCGGCGUg -3'
miRNA:   3'- gCG-GGCGaC-CGCGa-GGg--GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 39620 0.66 0.334321
Target:  5'- aGCCCcaggggcaaGcCUGGCGCgcccgccaggCCCacggGCGGCGCa -3'
miRNA:   3'- gCGGG---------C-GACCGCGa---------GGGg---CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 71902 0.66 0.327337
Target:  5'- gGCgCUGCagcGGCGgaCCCggcgCGCGGCGCg -3'
miRNA:   3'- gCG-GGCGa--CCGCgaGGG----GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 30161 0.66 0.325263
Target:  5'- gCGCCCuggguGCgUGGCGCUCggcggaCCuggccgacgcggugCGCGGCGCg -3'
miRNA:   3'- -GCGGG-----CG-ACCGCGAG------GG--------------GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 68201 0.66 0.327337
Target:  5'- aGCCCGCacaguagggGGCGCacgggCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa--------CCGCGagg--GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 77385 0.66 0.334321
Target:  5'- gCGCCCGCUcuCGCUcguggCCCgGCGGCaCUa -3'
miRNA:   3'- -GCGGGCGAccGCGA-----GGGgCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 105930 0.66 0.334321
Target:  5'- gGCCCGCcgcGGCcgagaGCaccgggagCCCgGCGGCGCc -3'
miRNA:   3'- gCGGGCGa--CCG-----CGa-------GGGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 55343 0.66 0.327337
Target:  5'- cCGCUCGCggcGGUGCUgaacgCgCCGCgGGCGCc -3'
miRNA:   3'- -GCGGGCGa--CCGCGA-----GgGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 37516 0.66 0.327337
Target:  5'- gCGCgCCGcCUGGaCGCaCCCuCGaCGGUGCa -3'
miRNA:   3'- -GCG-GGC-GACC-GCGaGGG-GC-GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 65508 0.66 0.334321
Target:  5'- gGCgCgGCUGggacucGCGCUCUCCGCgcucaccgagggGGCGCUc -3'
miRNA:   3'- gCG-GgCGAC------CGCGAGGGGCG------------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 116942 0.66 0.334321
Target:  5'- aGCCCGUac-CGCUgCCUgGCGGUGCUc -3'
miRNA:   3'- gCGGGCGaccGCGA-GGGgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 74125 0.66 0.334321
Target:  5'- cCGgCCG-UGGUGCUgCgCGUGGCGCc -3'
miRNA:   3'- -GCgGGCgACCGCGAgGgGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 124599 0.66 0.334321
Target:  5'- gCGCCgGCcgGGCGCgggUCCCCG-GGCcCg -3'
miRNA:   3'- -GCGGgCGa-CCGCG---AGGGGCgCCGcGa -5'
6674 5' -68.1 NC_001847.1 + 99509 0.66 0.334321
Target:  5'- aGCCUGgaGuuuGCGCcgagCCCCGCGccGCGCg -3'
miRNA:   3'- gCGGGCgaC---CGCGa---GGGGCGC--CGCGa -5'
6674 5' -68.1 NC_001847.1 + 42029 0.66 0.339985
Target:  5'- uGCCgGCgcGGCGCcuuuauagcccgCCCCGCuuugcgGGCGCg -3'
miRNA:   3'- gCGGgCGa-CCGCGa-----------GGGGCG------CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 49551 0.66 0.334321
Target:  5'- gCGCCUuuGCcGGCGCgCCCguCGaCGGCGCc -3'
miRNA:   3'- -GCGGG--CGaCCGCGaGGG--GC-GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 132280 0.66 0.334321
Target:  5'- gGCCCGCgcgucggccugGGCGCUgg-CGCGcGCGCUg -3'
miRNA:   3'- gCGGGCGa----------CCGCGAgggGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 19858 0.66 0.341413
Target:  5'- gGCgCCGCUGuggacaCGCUCaucaUgGCGGCGCUg -3'
miRNA:   3'- gCG-GGCGACc-----GCGAGg---GgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 66692 0.66 0.327337
Target:  5'- uCGCCUccacaGCgGGCGCUCCCgCGCcauGCuGCUg -3'
miRNA:   3'- -GCGGG-----CGaCCGCGAGGG-GCGc--CG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.