miRNA display CGI


Results 21 - 40 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 130762 0.66 0.341413
Target:  5'- gGgCCGC-GGCGCgcgCgCUCGCGGuCGCg -3'
miRNA:   3'- gCgGGCGaCCGCGa--G-GGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 75934 0.66 0.334321
Target:  5'- gGCgCCGCcGuGCGCcgCCacaCGCGGCGUg -3'
miRNA:   3'- gCG-GGCGaC-CGCGa-GGg--GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 55343 0.66 0.327337
Target:  5'- cCGCUCGCggcGGUGCUgaacgCgCCGCgGGCGCc -3'
miRNA:   3'- -GCGGGCGa--CCGCGA-----GgGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 65508 0.66 0.334321
Target:  5'- gGCgCgGCUGggacucGCGCUCUCCGCgcucaccgagggGGCGCUc -3'
miRNA:   3'- gCG-GgCGAC------CGCGAGGGGCG------------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 24970 0.66 0.341413
Target:  5'- uGCCCGUcgGGCGCUCgCUGU--CGCUg -3'
miRNA:   3'- gCGGGCGa-CCGCGAGgGGCGccGCGA- -5'
6674 5' -68.1 NC_001847.1 + 52277 0.66 0.341413
Target:  5'- uGCCCGCgcgccggcuuugUGuGCGCga-CCGCGGgCGCg -3'
miRNA:   3'- gCGGGCG------------AC-CGCGaggGGCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 68201 0.66 0.327337
Target:  5'- aGCCCGCacaguagggGGCGCacgggCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa--------CCGCGagg--GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 71902 0.66 0.327337
Target:  5'- gGCgCUGCagcGGCGgaCCCggcgCGCGGCGCg -3'
miRNA:   3'- gCG-GGCGa--CCGCgaGGG----GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 24130 0.66 0.334321
Target:  5'- aGCCCGCgcgcgaacuugcUGcGCGCaaagUCCUCGaaCGGCGCg -3'
miRNA:   3'- gCGGGCG------------AC-CGCG----AGGGGC--GCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 39620 0.66 0.334321
Target:  5'- aGCCCcaggggcaaGcCUGGCGCgcccgccaggCCCacggGCGGCGCa -3'
miRNA:   3'- gCGGG---------C-GACCGCGa---------GGGg---CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 105930 0.66 0.334321
Target:  5'- gGCCCGCcgcGGCcgagaGCaccgggagCCCgGCGGCGCc -3'
miRNA:   3'- gCGGGCGa--CCG-----CGa-------GGGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 76593 0.66 0.348612
Target:  5'- uCGCcgCCGCUGGCgGCggcgaagaCCGCGGCGg- -3'
miRNA:   3'- -GCG--GGCGACCG-CGagg-----GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 5443 0.66 0.34428
Target:  5'- gCGUCuCGCUccacaagcgcgucccGGcCGCUCUCUGCGGCGg- -3'
miRNA:   3'- -GCGG-GCGA---------------CC-GCGAGGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 77385 0.66 0.334321
Target:  5'- gCGCCCGCUcuCGCUcguggCCCgGCGGCaCUa -3'
miRNA:   3'- -GCGGGCGAccGCGA-----GGGgCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 54162 0.66 0.341413
Target:  5'- gCGCUCuuUGGcCGCUCCCCGgagcacuuugacCGcGCGCUc -3'
miRNA:   3'- -GCGGGcgACC-GCGAGGGGC------------GC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 42029 0.66 0.339985
Target:  5'- uGCCgGCgcGGCGCcuuuauagcccgCCCCGCuuugcgGGCGCg -3'
miRNA:   3'- gCGGgCGa-CCGCGa-----------GGGGCG------CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133143 0.66 0.341413
Target:  5'- gCGCgUGgUGGUGCUCuacgaCCCGCugcccggggaGGCGCUg -3'
miRNA:   3'- -GCGgGCgACCGCGAG-----GGGCG----------CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 10894 0.66 0.341413
Target:  5'- cCGCCUGC-GGCaGCUggUgGCGGCGCg -3'
miRNA:   3'- -GCGGGCGaCCG-CGAggGgCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 132280 0.66 0.334321
Target:  5'- gGCCCGCgcgucggccugGGCGCUgg-CGCGcGCGCUg -3'
miRNA:   3'- gCGGGCGa----------CCGCGAgggGCGC-CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 116942 0.66 0.334321
Target:  5'- aGCCCGUac-CGCUgCCUgGCGGUGCUc -3'
miRNA:   3'- gCGGGCGaccGCGA-GGGgCGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.