Results 21 - 40 of 620 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6674 | 5' | -68.1 | NC_001847.1 | + | 50039 | 0.76 | 0.076909 |
Target: 5'- aGCCCGCggGGCGCgguggcggccgcgggUCCgCgCGCGGCGCg -3' miRNA: 3'- gCGGGCGa-CCGCG---------------AGG-G-GCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 68072 | 0.76 | 0.076145 |
Target: 5'- gCGCCUGCggcggGGCGaaCgCCGCGGCGCg -3' miRNA: 3'- -GCGGGCGa----CCGCgaGgGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 62147 | 0.77 | 0.056338 |
Target: 5'- gCGCCCGCgcugcGGCcaGCUCCCgCGCGGgCGCg -3' miRNA: 3'- -GCGGGCGa----CCG--CGAGGG-GCGCC-GCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 82876 | 0.78 | 0.053563 |
Target: 5'- uCGCCCGUgcgGGCGCgccgcagCCaagCCGCGGCGCg -3' miRNA: 3'- -GCGGGCGa--CCGCGa------GG---GGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 103104 | 0.79 | 0.045318 |
Target: 5'- aGCCCGCgcgGGCGCcgUCCCCGCGccccgccggagcuucGCGCUc -3' miRNA: 3'- gCGGGCGa--CCGCG--AGGGGCGC---------------CGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 101377 | 0.79 | 0.043735 |
Target: 5'- uGCgCCGCgGGgGCUgCCCGCGGCGCc -3' miRNA: 3'- gCG-GGCGaCCgCGAgGGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 120783 | 0.8 | 0.037543 |
Target: 5'- cCGCgCGCUggcGGCGUUCCCCGCaGGCGCc -3' miRNA: 3'- -GCGgGCGA---CCGCGAGGGGCG-CCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 133570 | 0.8 | 0.0346 |
Target: 5'- gGCgCGCUGGCGCgcgccgugcuggCCUCGCGGCGCg -3' miRNA: 3'- gCGgGCGACCGCGa-----------GGGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 46597 | 0.81 | 0.032212 |
Target: 5'- aGcCCCGCcGGCGCggCCUCGCGGCGCa -3' miRNA: 3'- gC-GGGCGaCCGCGa-GGGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 60809 | 0.82 | 0.026247 |
Target: 5'- gCGCCCGCcagacacacugaUGGCGCgaggggCgCCCGCGGCGCUg -3' miRNA: 3'- -GCGGGCG------------ACCGCGa-----G-GGGCGCCGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 32284 | 0.77 | 0.057777 |
Target: 5'- cCGUCCGCgUGGCGCggCCCCGCGaCGCc -3' miRNA: 3'- -GCGGGCG-ACCGCGa-GGGGCGCcGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 133050 | 0.77 | 0.059252 |
Target: 5'- gGCCCGCcgccGCGCgggCCCCGCGGgGCg -3' miRNA: 3'- gCGGGCGac--CGCGa--GGGGCGCCgCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 66351 | 0.76 | 0.074266 |
Target: 5'- gGCgCCGCcgUGGCGaucgUCCCCGUGGCGCc -3' miRNA: 3'- gCG-GGCG--ACCGCg---AGGGGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 65917 | 0.76 | 0.072432 |
Target: 5'- uCGCCguCGCggcgucGGCGUUCCCCGCGGaCGCc -3' miRNA: 3'- -GCGG--GCGa-----CCGCGAGGGGCGCC-GCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 106801 | 0.76 | 0.070642 |
Target: 5'- gGCCCG--GGCGCgcggCCCCGCGGgGCg -3' miRNA: 3'- gCGGGCgaCCGCGa---GGGGCGCCgCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 94224 | 0.76 | 0.070642 |
Target: 5'- aGCUCGCggcggGGCGC-CCgCGCGGCGCc -3' miRNA: 3'- gCGGGCGa----CCGCGaGGgGCGCCGCGa -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 83485 | 0.76 | 0.067188 |
Target: 5'- cCGCCCuguuGCgGGCGCagCgCCGCGGCGCUg -3' miRNA: 3'- -GCGGG----CGaCCGCGa-GgGGCGCCGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 102774 | 0.76 | 0.067188 |
Target: 5'- aCGCCCGCgacgccGGCGCcCCCCGCgcgGGgGCUg -3' miRNA: 3'- -GCGGGCGa-----CCGCGaGGGGCG---CCgCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 43124 | 0.77 | 0.062311 |
Target: 5'- uGCCCGCagacGGCGCgggCCCGCGgGCGCUg -3' miRNA: 3'- gCGGGCGa---CCGCGag-GGGCGC-CGCGA- -5' |
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6674 | 5' | -68.1 | NC_001847.1 | + | 121728 | 0.77 | 0.061843 |
Target: 5'- gCGCgCGCUGGCGCgccCgucuuucucccgggCCCGCGGCGCg -3' miRNA: 3'- -GCGgGCGACCGCGa--G--------------GGGCGCCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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