miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 116426 1.07 0.000313
Target:  5'- cCGCCCGCUGGCGCUCCCCGCGGCGCUg -3'
miRNA:   3'- -GCGGGCGACCGCGAGGGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 60809 0.82 0.026247
Target:  5'- gCGCCCGCcagacacacugaUGGCGCgaggggCgCCCGCGGCGCUg -3'
miRNA:   3'- -GCGGGCG------------ACCGCGa-----G-GGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 91763 0.81 0.032212
Target:  5'- gGUCCGCgGGCGCUCCguCgGCGGCGCUg -3'
miRNA:   3'- gCGGGCGaCCGCGAGG--GgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 46597 0.81 0.032212
Target:  5'- aGcCCCGCcGGCGCggCCUCGCGGCGCa -3'
miRNA:   3'- gC-GGGCGaCCGCGa-GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 133570 0.8 0.0346
Target:  5'- gGCgCGCUGGCGCgcgccgugcuggCCUCGCGGCGCg -3'
miRNA:   3'- gCGgGCGACCGCGa-----------GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 30757 0.8 0.0346
Target:  5'- gGCgCGCUGGCGCgcgccgugcuggCCUCGCGGCGCg -3'
miRNA:   3'- gCGgGCGACCGCGa-----------GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 95298 0.8 0.037543
Target:  5'- gCGgCCGCUGGCGcCUCCaggCGCGGCGCc -3'
miRNA:   3'- -GCgGGCGACCGC-GAGGg--GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 120783 0.8 0.037543
Target:  5'- cCGCgCGCUggcGGCGUUCCCCGCaGGCGCc -3'
miRNA:   3'- -GCGgGCGA---CCGCGAGGGGCG-CCGCGa -5'
6674 5' -68.1 NC_001847.1 + 33765 0.8 0.038511
Target:  5'- gGCgCCGCgGGCaGC-CCCCGCGGCGCa -3'
miRNA:   3'- gCG-GGCGaCCG-CGaGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 101616 0.8 0.038511
Target:  5'- gCGCCCGCgcccGGCGC-CUCCGCGGCGg- -3'
miRNA:   3'- -GCGGGCGa---CCGCGaGGGGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 123054 0.79 0.040523
Target:  5'- aCGgCCGCgGGCGCcggaCCCGCGGCGCUc -3'
miRNA:   3'- -GCgGGCGaCCGCGag--GGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 101377 0.79 0.043735
Target:  5'- uGCgCCGCgGGgGCUgCCCGCGGCGCc -3'
miRNA:   3'- gCG-GGCGaCCgCGAgGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 125635 0.79 0.04486
Target:  5'- cCGCCCGCUcGGCucggguccGCUCgUCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGA-CCG--------CGAGgGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 291 0.79 0.045318
Target:  5'- aGCCCGCgcgGGCGCcgUCCCCGCGccccgccggagcuucGCGCUc -3'
miRNA:   3'- gCGGGCGa--CCGCG--AGGGGCGC---------------CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 103104 0.79 0.045318
Target:  5'- aGCCCGCgcgGGCGCcgUCCCCGCGccccgccggagcuucGCGCUc -3'
miRNA:   3'- gCGGGCGa--CCGCG--AGGGGCGC---------------CGCGA- -5'
6674 5' -68.1 NC_001847.1 + 45142 0.78 0.052226
Target:  5'- gCGCCUucuGCggGGUGCagCCCCGCGGCGCg -3'
miRNA:   3'- -GCGGG---CGa-CCGCGa-GGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 82876 0.78 0.053563
Target:  5'- uCGCCCGUgcgGGCGCgccgcagCCaagCCGCGGCGCg -3'
miRNA:   3'- -GCGGGCGa--CCGCGa------GG---GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 62147 0.77 0.056338
Target:  5'- gCGCCCGCgcugcGGCcaGCUCCCgCGCGGgCGCg -3'
miRNA:   3'- -GCGGGCGa----CCG--CGAGGG-GCGCC-GCGa -5'
6674 5' -68.1 NC_001847.1 + 32284 0.77 0.057777
Target:  5'- cCGUCCGCgUGGCGCggCCCCGCGaCGCc -3'
miRNA:   3'- -GCGGGCG-ACCGCGa-GGGGCGCcGCGa -5'
6674 5' -68.1 NC_001847.1 + 30237 0.77 0.059252
Target:  5'- gGCCCGCcgccGCGCgggCCCCGCGGgGCg -3'
miRNA:   3'- gCGGGCGac--CGCGa--GGGGCGCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.