miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6674 5' -68.1 NC_001847.1 + 128108 0.66 0.363335
Target:  5'- aGCCCaaacgacguggcGCUGGCGCUggcggaUgCGCGGcCGCUc -3'
miRNA:   3'- gCGGG------------CGACCGCGAg-----GgGCGCC-GCGA- -5'
6674 5' -68.1 NC_001847.1 + 129948 0.66 0.370856
Target:  5'- gGCgCGCUuGcCGCg-CUCGCGGCGCUg -3'
miRNA:   3'- gCGgGCGAcC-GCGagGGGCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 32049 0.66 0.370856
Target:  5'- gCGCCCGCgcgGGCucgGCggCCCC-CGG-GCUc -3'
miRNA:   3'- -GCGGGCGa--CCG---CGa-GGGGcGCCgCGA- -5'
6674 5' -68.1 NC_001847.1 + 94092 0.66 0.366331
Target:  5'- uGCCCGUgcagauuuugcauGUGCUaaaCgCCGCGGCGCg -3'
miRNA:   3'- gCGGGCGac-----------CGCGAg--G-GGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 104771 0.66 0.363335
Target:  5'- gCGCCCGCaccaGCGCcgagggCCCgccagcaacgCGCGGUGCUc -3'
miRNA:   3'- -GCGGGCGac--CGCGa-----GGG----------GCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 28497 0.66 0.370856
Target:  5'- aCGCCUuCUGGCGaggcguggCCCgGCaGCGCg -3'
miRNA:   3'- -GCGGGcGACCGCga------GGGgCGcCGCGa -5'
6674 5' -68.1 NC_001847.1 + 132015 0.66 0.370856
Target:  5'- uGCUCGC-GGgGCUgCUCGUaaaGGCGCUc -3'
miRNA:   3'- gCGGGCGaCCgCGAgGGGCG---CCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 102815 0.66 0.370099
Target:  5'- gGCCCGCgaucGcGUGUUCCagcgggucccguuCCGCGGCGg- -3'
miRNA:   3'- gCGGGCGa---C-CGCGAGG-------------GGCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 1102 0.66 0.363335
Target:  5'- gCGgCCGCgggcGGCGC-CgCCGCGGC-CUc -3'
miRNA:   3'- -GCgGGCGa---CCGCGaGgGGCGCCGcGA- -5'
6674 5' -68.1 NC_001847.1 + 57024 0.66 0.363335
Target:  5'- gCGCCCGCuuuUGGCGC-CCgCGUccaagaGGCGg- -3'
miRNA:   3'- -GCGGGCG---ACCGCGaGGgGCG------CCGCga -5'
6674 5' -68.1 NC_001847.1 + 91763 0.81 0.032212
Target:  5'- gGUCCGCgGGCGCUCCguCgGCGGCGCUg -3'
miRNA:   3'- gCGGGCGaCCGCGAGG--GgCGCCGCGA- -5'
6674 5' -68.1 NC_001847.1 + 10698 0.66 0.370856
Target:  5'- gCGCCCG--GGCGCggCCCGCGccggccaaGCGCc -3'
miRNA:   3'- -GCGGGCgaCCGCGagGGGCGC--------CGCGa -5'
6674 5' -68.1 NC_001847.1 + 15553 0.66 0.370856
Target:  5'- uCGCCgGgUGGCGCgggggaaCCCCcaucggcggcagGCGGCgGCUc -3'
miRNA:   3'- -GCGGgCgACCGCGa------GGGG------------CGCCG-CGA- -5'
6674 5' -68.1 NC_001847.1 + 52390 0.66 0.363335
Target:  5'- aGCCCuuccgGCaaGCGCUCCagcgcggGCGGCGCg -3'
miRNA:   3'- gCGGG-----CGacCGCGAGGgg-----CGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 41868 0.66 0.363335
Target:  5'- cCGCCgacauCGC-GGCGCgauacggCCCgCGCGGCGa- -3'
miRNA:   3'- -GCGG-----GCGaCCGCGa------GGG-GCGCCGCga -5'
6674 5' -68.1 NC_001847.1 + 54920 0.66 0.370856
Target:  5'- aGCUCGCgggGGUcuugagcgcccuGCgCUUCGCGGCGCa -3'
miRNA:   3'- gCGGGCGa--CCG------------CGaGGGGCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 90738 0.66 0.363335
Target:  5'- cCGCUCGC-GGCGCguggccgggCCCCGgGaGCGg- -3'
miRNA:   3'- -GCGGGCGaCCGCGa--------GGGGCgC-CGCga -5'
6674 5' -68.1 NC_001847.1 + 52239 0.66 0.363335
Target:  5'- aGCCCcCgGGCGCcgcgCgCCGCGGCuugGCUg -3'
miRNA:   3'- gCGGGcGaCCGCGa---GgGGCGCCG---CGA- -5'
6674 5' -68.1 NC_001847.1 + 81136 0.66 0.370856
Target:  5'- aGCUCGCUGaccGCGUagagCCaaCGCGGCGCc -3'
miRNA:   3'- gCGGGCGAC---CGCGa---GGg-GCGCCGCGa -5'
6674 5' -68.1 NC_001847.1 + 88907 0.66 0.363335
Target:  5'- -aCCCGaggcaCUGGUGCgagauuUCCCCGCGGCcgGCc -3'
miRNA:   3'- gcGGGC-----GACCGCG------AGGGGCGCCG--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.