Results 41 - 60 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6675 | 5' | -62.6 | NC_001847.1 | + | 3377 | 0.74 | 0.176034 |
Target: 5'- cGCGCGCCGA--GCCGCGCaaAGCCCu-- -3' miRNA: 3'- -UGCGCGGCUcuCGGCGUG--UCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 36348 | 0.74 | 0.179086 |
Target: 5'- cGCGCGCCGcggcgcgcgcacgcGGcGCCGcCGCGGCCCGg- -3' miRNA: 3'- -UGCGCGGC--------------UCuCGGC-GUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 87284 | 0.74 | 0.180408 |
Target: 5'- uGCGCGCCGAcGGCC-CGCGGCCgCGg- -3' miRNA: 3'- -UGCGCGGCUcUCGGcGUGUCGG-GCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 41367 | 0.74 | 0.180408 |
Target: 5'- uGCGCGCCGAGAG-CGCACGucacGCUCGc- -3' miRNA: 3'- -UGCGCGGCUCUCgGCGUGU----CGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 46544 | 0.74 | 0.184427 |
Target: 5'- gGCGCGCgCGAGguccuccAGCCGCGCGGCCg--- -3' miRNA: 3'- -UGCGCG-GCUC-------UCGGCGUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 30815 | 0.74 | 0.184878 |
Target: 5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3' miRNA: 3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 133628 | 0.74 | 0.184878 |
Target: 5'- cGCGCGCCGAG-GCCGCcuacgcGCGGCUCu-- -3' miRNA: 3'- -UGCGCGGCUCuCGGCG------UGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 110389 | 0.74 | 0.184878 |
Target: 5'- cGCGCGUCGcaccucAGccGGCUGCACGGCCCGg- -3' miRNA: 3'- -UGCGCGGC------UC--UCGGCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 131151 | 0.74 | 0.189446 |
Target: 5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3' miRNA: 3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 28338 | 0.74 | 0.189446 |
Target: 5'- gGCGCcCCGcGGGGCCGCGC-GCCCGg- -3' miRNA: 3'- -UGCGcGGC-UCUCGGCGUGuCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 60747 | 0.74 | 0.194113 |
Target: 5'- cGCGCGCgCGGcGGCCGCGCGGUCCc-- -3' miRNA: 3'- -UGCGCG-GCUcUCGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 87362 | 0.74 | 0.194113 |
Target: 5'- -gGCGCCGAG-GCCGaCGCguGGCCCGa- -3' miRNA: 3'- ugCGCGGCUCuCGGC-GUG--UCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 29027 | 0.74 | 0.194113 |
Target: 5'- uCGCGCCcAGAGCCGCGC-GCgCCGg- -3' miRNA: 3'- uGCGCGGcUCUCGGCGUGuCG-GGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 96916 | 0.74 | 0.19888 |
Target: 5'- gGCG-GCCGcguAGAGgCGCGCGGCCCGg- -3' miRNA: 3'- -UGCgCGGC---UCUCgGCGUGUCGGGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 3868 | 0.73 | 0.208721 |
Target: 5'- -gGCGCCG-GGGCUGCGCAGCUCc-- -3' miRNA: 3'- ugCGCGGCuCUCGGCGUGUCGGGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 105805 | 0.73 | 0.208721 |
Target: 5'- cGCGCGCUG-GAGCCGCGCGcGCuCCa-- -3' miRNA: 3'- -UGCGCGGCuCUCGGCGUGU-CG-GGcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 74388 | 0.73 | 0.213797 |
Target: 5'- -gGCGCUGGGGGaCCGCGCGGCCg--- -3' miRNA: 3'- ugCGCGGCUCUC-GGCGUGUCGGgcau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 99846 | 0.73 | 0.213797 |
Target: 5'- cGCGCGCCGcucggcGGGGCUGCGCAGUaCGUu -3' miRNA: 3'- -UGCGCGGC------UCUCGGCGUGUCGgGCAu -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 14003 | 0.73 | 0.215857 |
Target: 5'- aACGCGCCGAGAgcacggcagcaggcgGCgGCGCAGCgCGc- -3' miRNA: 3'- -UGCGCGGCUCU---------------CGgCGUGUCGgGCau -5' |
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6675 | 5' | -62.6 | NC_001847.1 | + | 42116 | 0.73 | 0.223734 |
Target: 5'- -gGCGCCGGGGGCCGCuucccGCguuggcgagagcuGGCCCGg- -3' miRNA: 3'- ugCGCGGCUCUCGGCG-----UG-------------UCGGGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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