miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 5' -58.2 NC_001847.1 + 80595 0.66 0.787159
Target:  5'- cGCGaCUGCgucuUCCCCGCCCc------ -3'
miRNA:   3'- aCGCcGACGa---AGGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 60660 0.66 0.787159
Target:  5'- cGCGGCcGCgUCCgCGCCCUc----- -3'
miRNA:   3'- aCGCCGaCGaAGGgGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 131742 0.66 0.787159
Target:  5'- --gGGCUGCUcUCCCGCUgCUUGcgGAg -3'
miRNA:   3'- acgCCGACGAaGGGGCGG-GAACaaCU- -5'
6676 5' -58.2 NC_001847.1 + 100074 0.66 0.777895
Target:  5'- uUGCcuGGCUGCUUgCCCCGUUUgcgUGgaaUGAg -3'
miRNA:   3'- -ACG--CCGACGAA-GGGGCGGGa--ACa--ACU- -5'
6676 5' -58.2 NC_001847.1 + 57520 0.66 0.777895
Target:  5'- gGCGGC-GCgccgUCCUCGCCCa------ -3'
miRNA:   3'- aCGCCGaCGa---AGGGGCGGGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 62452 0.66 0.768499
Target:  5'- gGCGGCcGCUcUCCCCGgCCUc----- -3'
miRNA:   3'- aCGCCGaCGA-AGGGGCgGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 84687 0.66 0.758981
Target:  5'- cUGCGGCaGCggcUUgCCGUCCUUGUc-- -3'
miRNA:   3'- -ACGCCGaCGa--AGgGGCGGGAACAacu -5'
6676 5' -58.2 NC_001847.1 + 63286 0.66 0.749349
Target:  5'- cGCGGCcGCUUCCaCCGCU---GggGAg -3'
miRNA:   3'- aCGCCGaCGAAGG-GGCGGgaaCaaCU- -5'
6676 5' -58.2 NC_001847.1 + 87586 0.67 0.739614
Target:  5'- cGCGGCcgccggGCUcCCCgCGCCCgccgUGcUGGa -3'
miRNA:   3'- aCGCCGa-----CGAaGGG-GCGGGa---ACaACU- -5'
6676 5' -58.2 NC_001847.1 + 81760 0.67 0.729784
Target:  5'- cUGCGGCgccggcaGCUagCCCUGCCCgcGUaUGAc -3'
miRNA:   3'- -ACGCCGa------CGAa-GGGGCGGGaaCA-ACU- -5'
6676 5' -58.2 NC_001847.1 + 88511 0.67 0.71987
Target:  5'- gGCGGCUGCgacgCCaaguuCGCCCUcGUa-- -3'
miRNA:   3'- aCGCCGACGaa--GGg----GCGGGAaCAacu -5'
6676 5' -58.2 NC_001847.1 + 91640 0.67 0.71987
Target:  5'- cUGCGGCUGCggcucuugCUUCGCCCUc----- -3'
miRNA:   3'- -ACGCCGACGaa------GGGGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 20030 0.67 0.71987
Target:  5'- gGCGGCccUGCggCCgCCGCCCUg----- -3'
miRNA:   3'- aCGCCG--ACGaaGG-GGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 81367 0.67 0.699822
Target:  5'- gGCGGCUGCggugCUgCCGCCCUc----- -3'
miRNA:   3'- aCGCCGACGaa--GG-GGCGGGAacaacu -5'
6676 5' -58.2 NC_001847.1 + 39183 0.67 0.699822
Target:  5'- aGCGGCUGCUgcgcucacgcUCgCCCGCCagcGUUc- -3'
miRNA:   3'- aCGCCGACGA----------AG-GGGCGGgaaCAAcu -5'
6676 5' -58.2 NC_001847.1 + 77096 0.68 0.683616
Target:  5'- cGCGaGCUGCgucagccgggucgCCagcagcgggCCGCCCUUGUUGc -3'
miRNA:   3'- aCGC-CGACGaa-----------GG---------GGCGGGAACAACu -5'
6676 5' -58.2 NC_001847.1 + 40330 0.68 0.679546
Target:  5'- aGCGGCUGCggCCCuCGgcgaCCUUGa--- -3'
miRNA:   3'- aCGCCGACGaaGGG-GCg---GGAACaacu -5'
6676 5' -58.2 NC_001847.1 + 22824 0.68 0.679546
Target:  5'- gGCGGCcGC-UCCCCGCCgagguaGUUGu -3'
miRNA:   3'- aCGCCGaCGaAGGGGCGGgaa---CAACu -5'
6676 5' -58.2 NC_001847.1 + 103114 0.68 0.659112
Target:  5'- cGCGGggGCUUCCCCGCgCg------ -3'
miRNA:   3'- aCGCCgaCGAAGGGGCGgGaacaacu -5'
6676 5' -58.2 NC_001847.1 + 118980 0.68 0.648858
Target:  5'- cGCGGCcaacgggGCggucgCCCCGgCCUUGUUc- -3'
miRNA:   3'- aCGCCGa------CGaa---GGGGCgGGAACAAcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.