miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 3' -56 NC_001847.1 + 112762 0.66 0.866934
Target:  5'- cGCGaCCCCGGCccgcgGGGgccucGUCCCa -3'
miRNA:   3'- -CGUcGGGGCCGa----CCCauauaUAGGGg -5'
6678 3' -56 NC_001847.1 + 4084 0.66 0.89521
Target:  5'- uCGGCCUCGGCcucagcgucGGcGUcgGUGcUCCCCu -3'
miRNA:   3'- cGUCGGGGCCGa--------CC-CAuaUAU-AGGGG- -5'
6678 3' -56 NC_001847.1 + 5357 0.69 0.72444
Target:  5'- cCGGCCgCGGCUGGaUGUcUGUCUCUc -3'
miRNA:   3'- cGUCGGgGCCGACCcAUAuAUAGGGG- -5'
6678 3' -56 NC_001847.1 + 21666 0.68 0.818258
Target:  5'- gGCgAGCCCCccGGCgacGGGUAUGgcgagGagCCCg -3'
miRNA:   3'- -CG-UCGGGG--CCGa--CCCAUAUa----UagGGG- -5'
6678 3' -56 NC_001847.1 + 6985 0.66 0.901068
Target:  5'- aUAGCUugCCGGCgUGGGUAguuUGUAUaugcacacccgcgCCCCu -3'
miRNA:   3'- cGUCGG--GGCCG-ACCCAU---AUAUA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 82038 0.69 0.732365
Target:  5'- aGCAGCCgCUGGC-GGGccgccg-CCCCg -3'
miRNA:   3'- -CGUCGG-GGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 22856 0.66 0.901708
Target:  5'- cGCGGUCCUGGguuucagcuCUGGGgg-GUcgCCgCCg -3'
miRNA:   3'- -CGUCGGGGCC---------GACCCauaUAuaGG-GG- -5'
6678 3' -56 NC_001847.1 + 75286 0.66 0.901708
Target:  5'- cGCGGCCCuCGGCgaccgcgccUGGccg-GUG-CCCCg -3'
miRNA:   3'- -CGUCGGG-GCCG---------ACCcauaUAUaGGGG- -5'
6678 3' -56 NC_001847.1 + 60014 0.68 0.809502
Target:  5'- cCGGCCCCGGC-GGGg------CCCg -3'
miRNA:   3'- cGUCGGGGCCGaCCCauauauaGGGg -5'
6678 3' -56 NC_001847.1 + 21783 0.73 0.531116
Target:  5'- cCGGCgCCGGCcGGGcgcggGUCCCCg -3'
miRNA:   3'- cGUCGgGGCCGaCCCauauaUAGGGG- -5'
6678 3' -56 NC_001847.1 + 8737 0.66 0.877236
Target:  5'- cCAGCCCCGGCaaaggcaaGGUAagcgcauccgCCCCg -3'
miRNA:   3'- cGUCGGGGCCGac------CCAUauaua-----GGGG- -5'
6678 3' -56 NC_001847.1 + 75646 0.66 0.891199
Target:  5'- uGCGGCCucggcgcacccccugCCGGCUGGGgacuacGUGUAcgUgCCg -3'
miRNA:   3'- -CGUCGG---------------GGCCGACCCa-----UAUAUa-GgGG- -5'
6678 3' -56 NC_001847.1 + 120059 0.68 0.773877
Target:  5'- cGCGGCCCC-GCUGccgcaggcgAUCCCCg -3'
miRNA:   3'- -CGUCGGGGcCGACccauaua--UAGGGG- -5'
6678 3' -56 NC_001847.1 + 8481 0.7 0.71045
Target:  5'- gGCGGCgCUCGGCcGGGggcggggCCCCu -3'
miRNA:   3'- -CGUCG-GGGCCGaCCCauauauaGGGG- -5'
6678 3' -56 NC_001847.1 + 24351 0.68 0.791509
Target:  5'- cGCGGCCUuuuCGGUaGGGUAc-UGUCCgCCu -3'
miRNA:   3'- -CGUCGGG---GCCGaCCCAUauAUAGG-GG- -5'
6678 3' -56 NC_001847.1 + 12989 0.68 0.772936
Target:  5'- uGCAGUaCCGGCUGGGgGUGgggggCCUg -3'
miRNA:   3'- -CGUCGgGGCCGACCCaUAUaua--GGGg -5'
6678 3' -56 NC_001847.1 + 46923 0.67 0.853862
Target:  5'- uCGGCUCCGGCgaggcgcuuuUGGGUGUccggcagcagaaagCCCCg -3'
miRNA:   3'- cGUCGGGGCCG----------ACCCAUAuaua----------GGGG- -5'
6678 3' -56 NC_001847.1 + 102242 0.73 0.541087
Target:  5'- cGCGGCCCCGGCU---------UCCCCg -3'
miRNA:   3'- -CGUCGGGGCCGAcccauauauAGGGG- -5'
6678 3' -56 NC_001847.1 + 109798 0.67 0.842655
Target:  5'- uCAGCUugCCGGCgUGGGUAguuUGUAUaugcacacccgcgCCCCu -3'
miRNA:   3'- cGUCGG--GGCCG-ACCCAU---AUAUA-------------GGGG- -5'
6678 3' -56 NC_001847.1 + 59582 0.67 0.843469
Target:  5'- -aAGCUCUGGCUGGcGUGcGcGUCCgCCc -3'
miRNA:   3'- cgUCGGGGCCGACC-CAUaUaUAGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.