miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 55013 0.66 0.696191
Target:  5'- cGCUGGagucCAUGCGCgCGuCGGGcGCGUUu -3'
miRNA:   3'- -UGACCaa--GUACGCG-GU-GCCCcCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 55065 0.7 0.468688
Target:  5'- aGCUGGccgcgUUUAUGCuggcgGCCGCgGGGGGCGg- -3'
miRNA:   3'- -UGACC-----AAGUACG-----CGGUG-CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 58901 0.68 0.58523
Target:  5'- --cGGcaaAUGCGCCGCGGgcGGGUGUUg -3'
miRNA:   3'- ugaCCaagUACGCGGUGCC--CCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 61248 0.7 0.487374
Target:  5'- gGCUGGgcCAU-CGCUGCGcGGGGCGcCg -3'
miRNA:   3'- -UGACCaaGUAcGCGGUGC-CCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 63832 0.68 0.615501
Target:  5'- cCUGGUgaacaCGUGCGCUuuccugcgcGCgGGGGGCG-Ca -3'
miRNA:   3'- uGACCAa----GUACGCGG---------UG-CCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 66518 0.71 0.441368
Target:  5'- gGCUGGagC-UGCGCgGCuGGGGGCG-Ca -3'
miRNA:   3'- -UGACCaaGuACGCGgUG-CCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 66547 0.66 0.735542
Target:  5'- cGCUGGacgCGUGCGCCuacuGCGGcaGCGUg -3'
miRNA:   3'- -UGACCaa-GUACGCGG----UGCCccCGCAg -5'
6679 5' -59.6 NC_001847.1 + 68775 0.69 0.516039
Target:  5'- aGCUaGcGUUCG-GCGCCACGGGGaCGaUCg -3'
miRNA:   3'- -UGA-C-CAAGUaCGCGGUGCCCCcGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 68921 0.69 0.53945
Target:  5'- cGCUgaGGUUCGgcgcgGCgGCCGCGGGcugcgccuccagccaGGCGUCc -3'
miRNA:   3'- -UGA--CCAAGUa----CG-CGGUGCCC---------------CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 68946 0.67 0.625625
Target:  5'- cGCUGGgcg--GCGCCGaugcggaagaGGGGGCGg- -3'
miRNA:   3'- -UGACCaaguaCGCGGUg---------CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 69027 0.66 0.735542
Target:  5'- uGCUGcGgugCGUcGCGCUgucggcguACGGGGGCGa- -3'
miRNA:   3'- -UGAC-Caa-GUA-CGCGG--------UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 69553 0.7 0.459483
Target:  5'- gGCgUGGaugcgCGUGUGCCugGGGGGCc-- -3'
miRNA:   3'- -UG-ACCaa---GUACGCGGugCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 72016 0.66 0.723858
Target:  5'- cCUGGUgcacaaccgaccCGUGCGCgGCGgcggccccGGGGCGUa -3'
miRNA:   3'- uGACCAa-----------GUACGCGgUGC--------CCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 73054 0.67 0.676164
Target:  5'- uGCUGGcgaagCAacGCGCCGCGGGcGCGg- -3'
miRNA:   3'- -UGACCaa---GUa-CGCGGUGCCCcCGCag -5'
6679 5' -59.6 NC_001847.1 + 78962 0.72 0.381332
Target:  5'- gGCUGGcgcUCGcGCaGCCuCGGGGGCGUg -3'
miRNA:   3'- -UGACCa--AGUaCG-CGGuGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 81579 0.67 0.655997
Target:  5'- --cGGggCcgGCgGCUACGGGaGCGUCg -3'
miRNA:   3'- ugaCCaaGuaCG-CGGUGCCCcCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 83244 0.66 0.686199
Target:  5'- gGCcGGggCGgcggccgaaaGCGCgGCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaaGUa---------CGCGgUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 83530 0.68 0.575197
Target:  5'- --cGGUcCGUGCGCCGCcccGGGGUGg- -3'
miRNA:   3'- ugaCCAaGUACGCGGUGc--CCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 87688 0.71 0.441368
Target:  5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3'
miRNA:   3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5'
6679 5' -59.6 NC_001847.1 + 88292 0.83 0.07117
Target:  5'- cACUGGccu-UGCGCCGCGGGGGCGgUCg -3'
miRNA:   3'- -UGACCaaguACGCGGUGCCCCCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.