Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 31451 | 0.76 | 0.21962 |
Target: 5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3' miRNA: 3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 96299 | 0.74 | 0.29183 |
Target: 5'- -gUGGUgugugaGUGCGCCGCGGGGGaucgcucggUGUCg -3' miRNA: 3'- ugACCAag----UACGCGGUGCCCCC---------GCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 53864 | 0.72 | 0.381332 |
Target: 5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3' miRNA: 3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 78962 | 0.72 | 0.381332 |
Target: 5'- gGCUGGcgcUCGcGCaGCCuCGGGGGCGUg -3' miRNA: 3'- -UGACCa--AGUaCG-CGGuGCCCCCGCAg -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 87688 | 0.71 | 0.441368 |
Target: 5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3' miRNA: 3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 69553 | 0.7 | 0.459483 |
Target: 5'- gGCgUGGaugcgCGUGUGCCugGGGGGCc-- -3' miRNA: 3'- -UG-ACCaa---GUACGCGGugCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 55065 | 0.7 | 0.468688 |
Target: 5'- aGCUGGccgcgUUUAUGCuggcgGCCGCgGGGGGCGg- -3' miRNA: 3'- -UGACC-----AAGUACG-----CGGUG-CCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 58901 | 0.68 | 0.58523 |
Target: 5'- --cGGcaaAUGCGCCGCGGgcGGGUGUUg -3' miRNA: 3'- ugaCCaagUACGCGGUGCC--CCCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 101841 | 0.68 | 0.58523 |
Target: 5'- aACaGGc---UGCGCacaaaCGCGGGGGCGUCg -3' miRNA: 3'- -UGaCCaaguACGCG-----GUGCCCCCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 83530 | 0.68 | 0.575197 |
Target: 5'- --cGGUcCGUGCGCCGCcccGGGGUGg- -3' miRNA: 3'- ugaCCAaGUACGCGGUGc--CCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 121351 | 0.69 | 0.535522 |
Target: 5'- cUUGGUUUcUGCGCgGCGGGcGGgGUg -3' miRNA: 3'- uGACCAAGuACGCGgUGCCC-CCgCAg -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 44429 | 0.69 | 0.506405 |
Target: 5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3' miRNA: 3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 7242 | 0.7 | 0.483608 |
Target: 5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3' miRNA: 3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 101353 | 0.7 | 0.481731 |
Target: 5'- gGCUcGGggCugcaugcgcgcgcuUGCGCCGCGGGGGCu-- -3' miRNA: 3'- -UGA-CCaaGu-------------ACGCGGUGCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 32118 | 0.67 | 0.666094 |
Target: 5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3' miRNA: 3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 96610 | 0.67 | 0.666094 |
Target: 5'- cGCgGGUUUuccuUGCGCgugCGCGGGGGCcggcggguacgcGUCg -3' miRNA: 3'- -UGaCCAAGu---ACGCG---GUGCCCCCG------------CAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 73054 | 0.67 | 0.676164 |
Target: 5'- uGCUGGcgaagCAacGCGCCGCGGGcGCGg- -3' miRNA: 3'- -UGACCaa---GUa-CGCGGUGCCCcCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 22406 | 0.66 | 0.696191 |
Target: 5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3' miRNA: 3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 55013 | 0.66 | 0.696191 |
Target: 5'- cGCUGGagucCAUGCGCgCGuCGGGcGCGUUu -3' miRNA: 3'- -UGACCaa--GUACGCG-GU-GCCCcCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 42049 | 0.74 | 0.285162 |
Target: 5'- gACUGGcUCGUGUGCCugGGGcuGGUGcCg -3' miRNA: 3'- -UGACCaAGUACGCGGugCCC--CCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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