miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 90087 0.67 0.655997
Target:  5'- uACUGGcUCuggGaCGCCACcgcgGGGGGCGc- -3'
miRNA:   3'- -UGACCaAGua-C-GCGGUG----CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 121351 0.69 0.535522
Target:  5'- cUUGGUUUcUGCGCgGCGGGcGGgGUg -3'
miRNA:   3'- uGACCAAGuACGCGgUGCCC-CCgCAg -5'
6679 5' -59.6 NC_001847.1 + 83530 0.68 0.575197
Target:  5'- --cGGUcCGUGCGCCGCcccGGGGUGg- -3'
miRNA:   3'- ugaCCAaGUACGCGGUGc--CCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 101841 0.68 0.58523
Target:  5'- aACaGGc---UGCGCacaaaCGCGGGGGCGUCg -3'
miRNA:   3'- -UGaCCaaguACGCG-----GUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 58901 0.68 0.58523
Target:  5'- --cGGcaaAUGCGCCGCGGgcGGGUGUUg -3'
miRNA:   3'- ugaCCaagUACGCGGUGCC--CCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 134116 0.68 0.595296
Target:  5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3'
miRNA:   3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5'
6679 5' -59.6 NC_001847.1 + 106146 0.68 0.595296
Target:  5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3'
miRNA:   3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 63832 0.68 0.615501
Target:  5'- cCUGGUgaacaCGUGCGCUuuccugcgcGCgGGGGGCG-Ca -3'
miRNA:   3'- uGACCAa----GUACGCGG---------UG-CCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 68946 0.67 0.625625
Target:  5'- cGCUGGgcg--GCGCCGaugcggaagaGGGGGCGg- -3'
miRNA:   3'- -UGACCaaguaCGCGGUg---------CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 44429 0.69 0.506405
Target:  5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3'
miRNA:   3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 7242 0.7 0.483608
Target:  5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3'
miRNA:   3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 101353 0.7 0.481731
Target:  5'- gGCUcGGggCugcaugcgcgcgcuUGCGCCGCGGGGGCu-- -3'
miRNA:   3'- -UGA-CCaaGu-------------ACGCGGUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 88292 0.83 0.07117
Target:  5'- cACUGGccu-UGCGCCGCGGGGGCGgUCg -3'
miRNA:   3'- -UGACCaaguACGCGGUGCCCCCGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 31451 0.76 0.21962
Target:  5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3'
miRNA:   3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 96299 0.74 0.29183
Target:  5'- -gUGGUgugugaGUGCGCCGCGGGGGaucgcucggUGUCg -3'
miRNA:   3'- ugACCAag----UACGCGGUGCCCCC---------GCAG- -5'
6679 5' -59.6 NC_001847.1 + 53864 0.72 0.381332
Target:  5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3'
miRNA:   3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 78962 0.72 0.381332
Target:  5'- gGCUGGcgcUCGcGCaGCCuCGGGGGCGUg -3'
miRNA:   3'- -UGACCa--AGUaCG-CGGuGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 87688 0.71 0.441368
Target:  5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3'
miRNA:   3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5'
6679 5' -59.6 NC_001847.1 + 69553 0.7 0.459483
Target:  5'- gGCgUGGaugcgCGUGUGCCugGGGGGCc-- -3'
miRNA:   3'- -UG-ACCaa---GUACGCGGugCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 55065 0.7 0.468688
Target:  5'- aGCUGGccgcgUUUAUGCuggcgGCCGCgGGGGGCGg- -3'
miRNA:   3'- -UGACC-----AAGUACG-----CGGUG-CCCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.