Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 88292 | 0.83 | 0.07117 |
Target: 5'- cACUGGccu-UGCGCCGCGGGGGCGgUCg -3' miRNA: 3'- -UGACCaaguACGCGGUGCCCCCGC-AG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 68946 | 0.67 | 0.625625 |
Target: 5'- cGCUGGgcg--GCGCCGaugcggaagaGGGGGCGg- -3' miRNA: 3'- -UGACCaaguaCGCGGUg---------CCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 63832 | 0.68 | 0.615501 |
Target: 5'- cCUGGUgaacaCGUGCGCUuuccugcgcGCgGGGGGCG-Ca -3' miRNA: 3'- uGACCAa----GUACGCGG---------UG-CCCCCGCaG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 106146 | 0.68 | 0.595296 |
Target: 5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3' miRNA: 3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 134116 | 0.68 | 0.595296 |
Target: 5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3' miRNA: 3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 58901 | 0.68 | 0.58523 |
Target: 5'- --cGGcaaAUGCGCCGCGGgcGGGUGUUg -3' miRNA: 3'- ugaCCaagUACGCGGUGCC--CCCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 101841 | 0.68 | 0.58523 |
Target: 5'- aACaGGc---UGCGCacaaaCGCGGGGGCGUCg -3' miRNA: 3'- -UGaCCaaguACGCG-----GUGCCCCCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 83530 | 0.68 | 0.575197 |
Target: 5'- --cGGUcCGUGCGCCGCcccGGGGUGg- -3' miRNA: 3'- ugaCCAaGUACGCGGUGc--CCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 121351 | 0.69 | 0.535522 |
Target: 5'- cUUGGUUUcUGCGCgGCGGGcGGgGUg -3' miRNA: 3'- uGACCAAGuACGCGgUGCCC-CCgCAg -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 44429 | 0.69 | 0.506405 |
Target: 5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3' miRNA: 3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 7242 | 0.7 | 0.483608 |
Target: 5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3' miRNA: 3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 101353 | 0.7 | 0.481731 |
Target: 5'- gGCUcGGggCugcaugcgcgcgcuUGCGCCGCGGGGGCu-- -3' miRNA: 3'- -UGA-CCaaGu-------------ACGCGGUGCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 55065 | 0.7 | 0.468688 |
Target: 5'- aGCUGGccgcgUUUAUGCuggcgGCCGCgGGGGGCGg- -3' miRNA: 3'- -UGACC-----AAGUACG-----CGGUG-CCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 69553 | 0.7 | 0.459483 |
Target: 5'- gGCgUGGaugcgCGUGUGCCugGGGGGCc-- -3' miRNA: 3'- -UG-ACCaa---GUACGCGGugCCCCCGcag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 87688 | 0.71 | 0.441368 |
Target: 5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3' miRNA: 3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 78962 | 0.72 | 0.381332 |
Target: 5'- gGCUGGcgcUCGcGCaGCCuCGGGGGCGUg -3' miRNA: 3'- -UGACCa--AGUaCG-CGGuGCCCCCGCAg -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 53864 | 0.72 | 0.381332 |
Target: 5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3' miRNA: 3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 96299 | 0.74 | 0.29183 |
Target: 5'- -gUGGUgugugaGUGCGCCGCGGGGGaucgcucggUGUCg -3' miRNA: 3'- ugACCAag----UACGCGGUGCCCCC---------GCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 31451 | 0.76 | 0.21962 |
Target: 5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3' miRNA: 3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5' |
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6679 | 5' | -59.6 | NC_001847.1 | + | 119509 | 1.09 | 0.001092 |
Target: 5'- uACUGGUUCAUGCGCCACGGGGGCGUCg -3' miRNA: 3'- -UGACCAAGUACGCGGUGCCCCCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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