Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 3333 | 0.68 | 0.595296 |
Target: 5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3' miRNA: 3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 7242 | 0.7 | 0.483608 |
Target: 5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3' miRNA: 3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 8452 | 0.67 | 0.655997 |
Target: 5'- cGCcGGgUCGgaggcgGCGCCGggcCGGGGGCGg- -3' miRNA: 3'- -UGaCCaAGUa-----CGCGGU---GCCCCCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 12343 | 0.68 | 0.575197 |
Target: 5'- cGCUGGUgagCgGUGgGCCugGcucGGGaGCGUCg -3' miRNA: 3'- -UGACCAa--G-UACgCGGugC---CCC-CGCAG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 12918 | 0.69 | 0.516039 |
Target: 5'- ------cCGUGcCGCCGCGGGGGCG-Cg -3' miRNA: 3'- ugaccaaGUAC-GCGGUGCCCCCGCaG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 14209 | 0.68 | 0.565203 |
Target: 5'- gGCUGGcggUCAg--GCCGgcCGGGGGCGUg -3' miRNA: 3'- -UGACCa--AGUacgCGGU--GCCCCCGCAg -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 19852 | 0.66 | 0.735542 |
Target: 5'- cUUGG--CccGCGCC-CGGGGGCGcCg -3' miRNA: 3'- uGACCaaGuaCGCGGuGCCCCCGCaG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 22406 | 0.66 | 0.696191 |
Target: 5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3' miRNA: 3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 31136 | 0.66 | 0.735542 |
Target: 5'- cGCUGucGUUUcUGCGgcuggccuUCGCGGGcGGCGUCg -3' miRNA: 3'- -UGAC--CAAGuACGC--------GGUGCCC-CCGCAG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 31303 | 0.68 | 0.595296 |
Target: 5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3' miRNA: 3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 31451 | 0.76 | 0.21962 |
Target: 5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3' miRNA: 3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 32118 | 0.67 | 0.666094 |
Target: 5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3' miRNA: 3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 33551 | 0.71 | 0.432463 |
Target: 5'- --aGGUUgAgucgagGCGCaCGCgGGGGGCGUCu -3' miRNA: 3'- ugaCCAAgUa-----CGCG-GUG-CCCCCGCAG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 34763 | 0.66 | 0.735542 |
Target: 5'- aGCUGGcgCGgcugcGCGCCGCGGccgcGGCG-Cg -3' miRNA: 3'- -UGACCaaGUa----CGCGGUGCCc---CCGCaG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 36797 | 0.66 | 0.723858 |
Target: 5'- uUUGGggcguuuugccgcUUCGUGCGCCACcggcgcgccgacuGGGGGCu-- -3' miRNA: 3'- uGACC-------------AAGUACGCGGUG-------------CCCCCGcag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 42049 | 0.74 | 0.285162 |
Target: 5'- gACUGGcUCGUGUGCCugGGGcuGGUGcCg -3' miRNA: 3'- -UGACCaAGUACGCGGugCCC--CCGCaG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 44429 | 0.69 | 0.506405 |
Target: 5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3' miRNA: 3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 45088 | 0.66 | 0.686199 |
Target: 5'- uGCUcGUg-GUGCGCCgggACGGGGGUGg- -3' miRNA: 3'- -UGAcCAagUACGCGG---UGCCCCCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 51516 | 0.69 | 0.555256 |
Target: 5'- cGCcGGUgcg-GCGCCggcagGCGGGGGCGg- -3' miRNA: 3'- -UGaCCAaguaCGCGG-----UGCCCCCGCag -5' |
|||||||
6679 | 5' | -59.6 | NC_001847.1 | + | 53864 | 0.72 | 0.381332 |
Target: 5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3' miRNA: 3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home