miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 3333 0.68 0.595296
Target:  5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3'
miRNA:   3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 7242 0.7 0.483608
Target:  5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3'
miRNA:   3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 8452 0.67 0.655997
Target:  5'- cGCcGGgUCGgaggcgGCGCCGggcCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaAGUa-----CGCGGU---GCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 12343 0.68 0.575197
Target:  5'- cGCUGGUgagCgGUGgGCCugGcucGGGaGCGUCg -3'
miRNA:   3'- -UGACCAa--G-UACgCGGugC---CCC-CGCAG- -5'
6679 5' -59.6 NC_001847.1 + 12918 0.69 0.516039
Target:  5'- ------cCGUGcCGCCGCGGGGGCG-Cg -3'
miRNA:   3'- ugaccaaGUAC-GCGGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 14209 0.68 0.565203
Target:  5'- gGCUGGcggUCAg--GCCGgcCGGGGGCGUg -3'
miRNA:   3'- -UGACCa--AGUacgCGGU--GCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 19852 0.66 0.735542
Target:  5'- cUUGG--CccGCGCC-CGGGGGCGcCg -3'
miRNA:   3'- uGACCaaGuaCGCGGuGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 22406 0.66 0.696191
Target:  5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3'
miRNA:   3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 31136 0.66 0.735542
Target:  5'- cGCUGucGUUUcUGCGgcuggccuUCGCGGGcGGCGUCg -3'
miRNA:   3'- -UGAC--CAAGuACGC--------GGUGCCC-CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 31303 0.68 0.595296
Target:  5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3'
miRNA:   3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5'
6679 5' -59.6 NC_001847.1 + 31451 0.76 0.21962
Target:  5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3'
miRNA:   3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 32118 0.67 0.666094
Target:  5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3'
miRNA:   3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 33551 0.71 0.432463
Target:  5'- --aGGUUgAgucgagGCGCaCGCgGGGGGCGUCu -3'
miRNA:   3'- ugaCCAAgUa-----CGCG-GUG-CCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 34763 0.66 0.735542
Target:  5'- aGCUGGcgCGgcugcGCGCCGCGGccgcGGCG-Cg -3'
miRNA:   3'- -UGACCaaGUa----CGCGGUGCCc---CCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 36797 0.66 0.723858
Target:  5'- uUUGGggcguuuugccgcUUCGUGCGCCACcggcgcgccgacuGGGGGCu-- -3'
miRNA:   3'- uGACC-------------AAGUACGCGGUG-------------CCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 42049 0.74 0.285162
Target:  5'- gACUGGcUCGUGUGCCugGGGcuGGUGcCg -3'
miRNA:   3'- -UGACCaAGUACGCGGugCCC--CCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 44429 0.69 0.506405
Target:  5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3'
miRNA:   3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 45088 0.66 0.686199
Target:  5'- uGCUcGUg-GUGCGCCgggACGGGGGUGg- -3'
miRNA:   3'- -UGAcCAagUACGCGG---UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 51516 0.69 0.555256
Target:  5'- cGCcGGUgcg-GCGCCggcagGCGGGGGCGg- -3'
miRNA:   3'- -UGaCCAaguaCGCGG-----UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 53864 0.72 0.381332
Target:  5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3'
miRNA:   3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.