miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 119509 1.09 0.001092
Target:  5'- uACUGGUUCAUGCGCCACGGGGGCGUCg -3'
miRNA:   3'- -UGACCAAGUACGCGGUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 88292 0.83 0.07117
Target:  5'- cACUGGccu-UGCGCCGCGGGGGCGgUCg -3'
miRNA:   3'- -UGACCaaguACGCGGUGCCCCCGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 31451 0.76 0.21962
Target:  5'- cGCUGGUgaUCGUggGCGCCAUGGGcgucGGUGUCu -3'
miRNA:   3'- -UGACCA--AGUA--CGCGGUGCCC----CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 42049 0.74 0.285162
Target:  5'- gACUGGcUCGUGUGCCugGGGcuGGUGcCg -3'
miRNA:   3'- -UGACCaAGUACGCGGugCCC--CCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 96299 0.74 0.29183
Target:  5'- -gUGGUgugugaGUGCGCCGCGGGGGaucgcucggUGUCg -3'
miRNA:   3'- ugACCAag----UACGCGGUGCCCCC---------GCAG- -5'
6679 5' -59.6 NC_001847.1 + 53864 0.72 0.381332
Target:  5'- cGCUGGcggCGccgacCGCCGCGGGGGCGg- -3'
miRNA:   3'- -UGACCaa-GUac---GCGGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 78962 0.72 0.381332
Target:  5'- gGCUGGcgcUCGcGCaGCCuCGGGGGCGUg -3'
miRNA:   3'- -UGACCa--AGUaCG-CGGuGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 33551 0.71 0.432463
Target:  5'- --aGGUUgAgucgagGCGCaCGCgGGGGGCGUCu -3'
miRNA:   3'- ugaCCAAgUa-----CGCG-GUG-CCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 87688 0.71 0.441368
Target:  5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3'
miRNA:   3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5'
6679 5' -59.6 NC_001847.1 + 114246 0.71 0.441368
Target:  5'- -gUGuGUUU-UGcCGCUGCGGGGGCGUCc -3'
miRNA:   3'- ugAC-CAAGuAC-GCGGUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 66518 0.71 0.441368
Target:  5'- gGCUGGagC-UGCGCgGCuGGGGGCG-Ca -3'
miRNA:   3'- -UGACCaaGuACGCGgUG-CCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 69553 0.7 0.459483
Target:  5'- gGCgUGGaugcgCGUGUGCCugGGGGGCc-- -3'
miRNA:   3'- -UG-ACCaa---GUACGCGGugCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 55065 0.7 0.468688
Target:  5'- aGCUGGccgcgUUUAUGCuggcgGCCGCgGGGGGCGg- -3'
miRNA:   3'- -UGACC-----AAGUACG-----CGGUG-CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 101353 0.7 0.481731
Target:  5'- gGCUcGGggCugcaugcgcgcgcuUGCGCCGCGGGGGCu-- -3'
miRNA:   3'- -UGA-CCaaGu-------------ACGCGGUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 7242 0.7 0.483608
Target:  5'- gGCUGG-UCGgguggcugugcggGCGCgGCGGGGGCa-- -3'
miRNA:   3'- -UGACCaAGUa------------CGCGgUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 61248 0.7 0.487374
Target:  5'- gGCUGGgcCAU-CGCUGCGcGGGGCGcCg -3'
miRNA:   3'- -UGACCaaGUAcGCGGUGC-CCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 44429 0.69 0.506405
Target:  5'- gGCUGcGUUC--GCG-CACGGGGGCG-Cg -3'
miRNA:   3'- -UGAC-CAAGuaCGCgGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 12918 0.69 0.516039
Target:  5'- ------cCGUGcCGCCGCGGGGGCG-Cg -3'
miRNA:   3'- ugaccaaGUAC-GCGGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 68775 0.69 0.516039
Target:  5'- aGCUaGcGUUCG-GCGCCACGGGGaCGaUCg -3'
miRNA:   3'- -UGA-C-CAAGUaCGCGGUGCCCCcGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 116473 0.69 0.524773
Target:  5'- --cGGUUCugcucaGCGUCGCGGGcgggcacGGCGUCg -3'
miRNA:   3'- ugaCCAAGua----CGCGGUGCCC-------CCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.