miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 45088 0.66 0.686199
Target:  5'- uGCUcGUg-GUGCGCCgggACGGGGGUGg- -3'
miRNA:   3'- -UGAcCAagUACGCGG---UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 83244 0.66 0.686199
Target:  5'- gGCcGGggCGgcggccgaaaGCGCgGCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaaGUa---------CGCGgUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 125219 0.66 0.696191
Target:  5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3'
miRNA:   3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 36797 0.66 0.723858
Target:  5'- uUUGGggcguuuugccgcUUCGUGCGCCACcggcgcgccgacuGGGGGCu-- -3'
miRNA:   3'- uGACC-------------AAGUACGCGGUG-------------CCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 72016 0.66 0.723858
Target:  5'- cCUGGUgcacaaccgaccCGUGCGCgGCGgcggccccGGGGCGUa -3'
miRNA:   3'- uGACCAa-----------GUACGCGgUGC--------CCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 69027 0.66 0.735542
Target:  5'- uGCUGcGgugCGUcGCGCUgucggcguACGGGGGCGa- -3'
miRNA:   3'- -UGAC-Caa-GUA-CGCGG--------UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 31136 0.66 0.735542
Target:  5'- cGCUGucGUUUcUGCGgcuggccuUCGCGGGcGGCGUCg -3'
miRNA:   3'- -UGAC--CAAGuACGC--------GGUGCCC-CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 34763 0.66 0.735542
Target:  5'- aGCUGGcgCGgcugcGCGCCGCGGccgcGGCG-Cg -3'
miRNA:   3'- -UGACCaaGUa----CGCGGUGCCc---CCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 66547 0.66 0.735542
Target:  5'- cGCUGGacgCGUGCGCCuacuGCGGcaGCGUg -3'
miRNA:   3'- -UGACCaa-GUACGCGG----UGCCccCGCAg -5'
6679 5' -59.6 NC_001847.1 + 22406 0.66 0.696191
Target:  5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3'
miRNA:   3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 55013 0.66 0.696191
Target:  5'- cGCUGGagucCAUGCGCgCGuCGGGcGCGUUu -3'
miRNA:   3'- -UGACCaa--GUACGCG-GU-GCCCcCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 19852 0.66 0.735542
Target:  5'- cUUGG--CccGCGCC-CGGGGGCGcCg -3'
miRNA:   3'- uGACCaaGuaCGCGGuGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 90087 0.67 0.655997
Target:  5'- uACUGGcUCuggGaCGCCACcgcgGGGGGCGc- -3'
miRNA:   3'- -UGACCaAGua-C-GCGGUG----CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 81579 0.67 0.655997
Target:  5'- --cGGggCcgGCgGCUACGGGaGCGUCg -3'
miRNA:   3'- ugaCCaaGuaCG-CGGUGCCCcCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 68946 0.67 0.625625
Target:  5'- cGCUGGgcg--GCGCCGaugcggaagaGGGGGCGg- -3'
miRNA:   3'- -UGACCaaguaCGCGGUg---------CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 73054 0.67 0.676164
Target:  5'- uGCUGGcgaagCAacGCGCCGCGGGcGCGg- -3'
miRNA:   3'- -UGACCaa---GUa-CGCGGUGCCCcCGCag -5'
6679 5' -59.6 NC_001847.1 + 96610 0.67 0.666094
Target:  5'- cGCgGGUUUuccuUGCGCgugCGCGGGGGCcggcggguacgcGUCg -3'
miRNA:   3'- -UGaCCAAGu---ACGCG---GUGCCCCCG------------CAG- -5'
6679 5' -59.6 NC_001847.1 + 134931 0.67 0.666094
Target:  5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3'
miRNA:   3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 111265 0.67 0.655997
Target:  5'- cGCcGGgUCGgaggcgGCGCCGggcCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaAGUa-----CGCGGU---GCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 102692 0.67 0.655997
Target:  5'- gGCgGGggCAggGCGCCggGCGGGcGGCGa- -3'
miRNA:   3'- -UGaCCaaGUa-CGCGG--UGCCC-CCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.