miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 134931 0.67 0.666094
Target:  5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3'
miRNA:   3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 134525 0.68 0.595296
Target:  5'- --cGGcgCAUGUGgugguaCACGGGGcGCGUCg -3'
miRNA:   3'- ugaCCaaGUACGCg-----GUGCCCC-CGCAG- -5'
6679 5' -59.6 NC_001847.1 + 134116 0.68 0.595296
Target:  5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3'
miRNA:   3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5'
6679 5' -59.6 NC_001847.1 + 125219 0.66 0.696191
Target:  5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3'
miRNA:   3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 121351 0.69 0.535522
Target:  5'- cUUGGUUUcUGCGCgGCGGGcGGgGUg -3'
miRNA:   3'- uGACCAAGuACGCGgUGCCC-CCgCAg -5'
6679 5' -59.6 NC_001847.1 + 119509 1.09 0.001092
Target:  5'- uACUGGUUCAUGCGCCACGGGGGCGUCg -3'
miRNA:   3'- -UGACCAAGUACGCGGUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 116665 0.69 0.552281
Target:  5'- cGCUGGUggccugcgugugggUCcgGCGCUGCGGGcGCGg- -3'
miRNA:   3'- -UGACCA--------------AGuaCGCGGUGCCCcCGCag -5'
6679 5' -59.6 NC_001847.1 + 116473 0.69 0.524773
Target:  5'- --cGGUUCugcucaGCGUCGCGGGcgggcacGGCGUCg -3'
miRNA:   3'- ugaCCAAGua----CGCGGUGCCC-------CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 114246 0.71 0.441368
Target:  5'- -gUGuGUUU-UGcCGCUGCGGGGGCGUCc -3'
miRNA:   3'- ugAC-CAAGuAC-GCGGUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 111265 0.67 0.655997
Target:  5'- cGCcGGgUCGgaggcgGCGCCGggcCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaAGUa-----CGCGGU---GCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 106146 0.68 0.595296
Target:  5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3'
miRNA:   3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 102692 0.67 0.655997
Target:  5'- gGCgGGggCAggGCGCCggGCGGGcGGCGa- -3'
miRNA:   3'- -UGaCCaaGUa-CGCGG--UGCCC-CCGCag -5'
6679 5' -59.6 NC_001847.1 + 101841 0.68 0.58523
Target:  5'- aACaGGc---UGCGCacaaaCGCGGGGGCGUCg -3'
miRNA:   3'- -UGaCCaaguACGCG-----GUGCCCCCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 101353 0.7 0.481731
Target:  5'- gGCUcGGggCugcaugcgcgcgcuUGCGCCGCGGGGGCu-- -3'
miRNA:   3'- -UGA-CCaaGu-------------ACGCGGUGCCCCCGcag -5'
6679 5' -59.6 NC_001847.1 + 96610 0.67 0.666094
Target:  5'- cGCgGGUUUuccuUGCGCgugCGCGGGGGCcggcggguacgcGUCg -3'
miRNA:   3'- -UGaCCAAGu---ACGCG---GUGCCCCCG------------CAG- -5'
6679 5' -59.6 NC_001847.1 + 96299 0.74 0.29183
Target:  5'- -gUGGUgugugaGUGCGCCGCGGGGGaucgcucggUGUCg -3'
miRNA:   3'- ugACCAag----UACGCGGUGCCCCC---------GCAG- -5'
6679 5' -59.6 NC_001847.1 + 90087 0.67 0.655997
Target:  5'- uACUGGcUCuggGaCGCCACcgcgGGGGGCGc- -3'
miRNA:   3'- -UGACCaAGua-C-GCGGUG----CCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 88292 0.83 0.07117
Target:  5'- cACUGGccu-UGCGCCGCGGGGGCGgUCg -3'
miRNA:   3'- -UGACCaaguACGCGGUGCCCCCGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 87688 0.71 0.441368
Target:  5'- cGCUGGggCugcugcgGCGCCGCGGcGGCGg- -3'
miRNA:   3'- -UGACCaaGua-----CGCGGUGCCcCCGCag -5'
6679 5' -59.6 NC_001847.1 + 83530 0.68 0.575197
Target:  5'- --cGGUcCGUGCGCCGCcccGGGGUGg- -3'
miRNA:   3'- ugaCCAaGUACGCGGUGc--CCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.