miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 5' -59.6 NC_001847.1 + 19852 0.66 0.735542
Target:  5'- cUUGG--CccGCGCC-CGGGGGCGcCg -3'
miRNA:   3'- uGACCaaGuaCGCGGuGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 68775 0.69 0.516039
Target:  5'- aGCUaGcGUUCG-GCGCCACGGGGaCGaUCg -3'
miRNA:   3'- -UGA-C-CAAGUaCGCGGUGCCCCcGC-AG- -5'
6679 5' -59.6 NC_001847.1 + 66518 0.71 0.441368
Target:  5'- gGCUGGagC-UGCGCgGCuGGGGGCG-Ca -3'
miRNA:   3'- -UGACCaaGuACGCGgUG-CCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 42049 0.74 0.285162
Target:  5'- gACUGGcUCGUGUGCCugGGGcuGGUGcCg -3'
miRNA:   3'- -UGACCaAGUACGCGGugCCC--CCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 96610 0.67 0.666094
Target:  5'- cGCgGGUUUuccuUGCGCgugCGCGGGGGCcggcggguacgcGUCg -3'
miRNA:   3'- -UGaCCAAGu---ACGCG---GUGCCCCCG------------CAG- -5'
6679 5' -59.6 NC_001847.1 + 32118 0.67 0.666094
Target:  5'- gGCUcGGgccccCggGCGCCggggGCGGGGGCGg- -3'
miRNA:   3'- -UGA-CCaa---GuaCGCGG----UGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 134525 0.68 0.595296
Target:  5'- --cGGcgCAUGUGgugguaCACGGGGcGCGUCg -3'
miRNA:   3'- ugaCCaaGUACGCg-----GUGCCCC-CGCAG- -5'
6679 5' -59.6 NC_001847.1 + 3333 0.68 0.595296
Target:  5'- cGCcGGcgCcgGCcuccggguagGCCAUGGGGGCGUa -3'
miRNA:   3'- -UGaCCaaGuaCG----------CGGUGCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 14209 0.68 0.565203
Target:  5'- gGCUGGcggUCAg--GCCGgcCGGGGGCGUg -3'
miRNA:   3'- -UGACCa--AGUacgCGGU--GCCCCCGCAg -5'
6679 5' -59.6 NC_001847.1 + 12918 0.69 0.516039
Target:  5'- ------cCGUGcCGCCGCGGGGGCG-Cg -3'
miRNA:   3'- ugaccaaGUAC-GCGGUGCCCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 116665 0.69 0.552281
Target:  5'- cGCUGGUggccugcgugugggUCcgGCGCUGCGGGcGCGg- -3'
miRNA:   3'- -UGACCA--------------AGuaCGCGGUGCCCcCGCag -5'
6679 5' -59.6 NC_001847.1 + 12343 0.68 0.575197
Target:  5'- cGCUGGUgagCgGUGgGCCugGcucGGGaGCGUCg -3'
miRNA:   3'- -UGACCAa--G-UACgCGGugC---CCC-CGCAG- -5'
6679 5' -59.6 NC_001847.1 + 55013 0.66 0.696191
Target:  5'- cGCUGGagucCAUGCGCgCGuCGGGcGCGUUu -3'
miRNA:   3'- -UGACCaa--GUACGCG-GU-GCCCcCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 68921 0.69 0.53945
Target:  5'- cGCUgaGGUUCGgcgcgGCgGCCGCGGGcugcgccuccagccaGGCGUCc -3'
miRNA:   3'- -UGA--CCAAGUa----CG-CGGUGCCC---------------CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 22406 0.66 0.696191
Target:  5'- --cGGcgagCGUGCucguCCGCGGGGGCGg- -3'
miRNA:   3'- ugaCCaa--GUACGc---GGUGCCCCCGCag -5'
6679 5' -59.6 NC_001847.1 + 31303 0.68 0.595296
Target:  5'- uGCUGcugCGgcGCGCCGCGGGcGGCGg- -3'
miRNA:   3'- -UGACcaaGUa-CGCGGUGCCC-CCGCag -5'
6679 5' -59.6 NC_001847.1 + 116473 0.69 0.524773
Target:  5'- --cGGUUCugcucaGCGUCGCGGGcgggcacGGCGUCg -3'
miRNA:   3'- ugaCCAAGua----CGCGGUGCCC-------CCGCAG- -5'
6679 5' -59.6 NC_001847.1 + 61248 0.7 0.487374
Target:  5'- gGCUGGgcCAU-CGCUGCGcGGGGCGcCg -3'
miRNA:   3'- -UGACCaaGUAcGCGGUGC-CCCCGCaG- -5'
6679 5' -59.6 NC_001847.1 + 73054 0.67 0.676164
Target:  5'- uGCUGGcgaagCAacGCGCCGCGGGcGCGg- -3'
miRNA:   3'- -UGACCaa---GUa-CGCGGUGCCCcCGCag -5'
6679 5' -59.6 NC_001847.1 + 8452 0.67 0.655997
Target:  5'- cGCcGGgUCGgaggcgGCGCCGggcCGGGGGCGg- -3'
miRNA:   3'- -UGaCCaAGUa-----CGCGGU---GCCCCCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.