miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 41015 0.66 0.844656
Target:  5'- --gUCGUgccgUCCUGCaacggGCGCGCCG-CGg -3'
miRNA:   3'- gaaAGCG----AGGACGga---CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 82596 0.66 0.844656
Target:  5'- ---gCGCUCgCggcggcGCCUGUGCGCCGcGCGc -3'
miRNA:   3'- gaaaGCGAG-Ga-----CGGACGUGCGGC-UGU- -5'
6680 3' -56.8 NC_001847.1 + 103824 0.66 0.836435
Target:  5'- ---gCGCUCCaccagGCCgccgcccgcgGCGCGCCGcaGCAg -3'
miRNA:   3'- gaaaGCGAGGa----CGGa---------CGUGCGGC--UGU- -5'
6680 3' -56.8 NC_001847.1 + 1011 0.66 0.836435
Target:  5'- ---gCGCUCCaccagGCCgccgcccgcgGCGCGCCGcaGCAg -3'
miRNA:   3'- gaaaGCGAGGa----CGGa---------CGUGCGGC--UGU- -5'
6680 3' -56.8 NC_001847.1 + 109697 0.66 0.836435
Target:  5'- ---gCGCUCg-GCCUGCA-GUCGGCGc -3'
miRNA:   3'- gaaaGCGAGgaCGGACGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 78420 0.66 0.828025
Target:  5'- ---gCGCUgCUGgCgcGCGCGCUGACGg -3'
miRNA:   3'- gaaaGCGAgGACgGa-CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 75096 0.66 0.828025
Target:  5'- -cUUCGCgCC-GCCUcGCGC-CCGACGa -3'
miRNA:   3'- gaAAGCGaGGaCGGA-CGUGcGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 67608 0.66 0.828025
Target:  5'- ---cCGC-CCgcGCCUGCggaaaaaggcgGCGCCGGCGg -3'
miRNA:   3'- gaaaGCGaGGa-CGGACG-----------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 42198 0.66 0.828025
Target:  5'- -cUUCGCagcggaCCU-CCUGCgauGCGCCGGCGc -3'
miRNA:   3'- gaAAGCGa-----GGAcGGACG---UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 73838 0.66 0.828025
Target:  5'- ---gCGCgUCCUGCCggcauuccugGCGCGCUaGGCGg -3'
miRNA:   3'- gaaaGCG-AGGACGGa---------CGUGCGG-CUGU- -5'
6680 3' -56.8 NC_001847.1 + 84165 0.66 0.828025
Target:  5'- ---gCGCUCgaG-CUGCGcCGCCGACu -3'
miRNA:   3'- gaaaGCGAGgaCgGACGU-GCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 97480 0.66 0.828025
Target:  5'- ---gCGCUaagcCCgcggGCUUGCGCGCCGGa- -3'
miRNA:   3'- gaaaGCGA----GGa---CGGACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 13138 0.66 0.828025
Target:  5'- ---cCGCgccgCCUGCC-GCG-GCCGGCGg -3'
miRNA:   3'- gaaaGCGa---GGACGGaCGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 92972 0.66 0.819434
Target:  5'- --cUCGCauUCC-GCCaGCAccCGCCGGCAa -3'
miRNA:   3'- gaaAGCG--AGGaCGGaCGU--GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 114365 0.66 0.819434
Target:  5'- ---aUGCUgCaGCCccccucgcaucUGCGCGCCGACGa -3'
miRNA:   3'- gaaaGCGAgGaCGG-----------ACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 49037 0.66 0.819434
Target:  5'- ---cCGCUCgUGCagcgUGCgcguaaagcuGCGCCGACAg -3'
miRNA:   3'- gaaaGCGAGgACGg---ACG----------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 86982 0.66 0.819434
Target:  5'- ---cCGCcggCCggGCCggcGCGCGCCGGCc -3'
miRNA:   3'- gaaaGCGa--GGa-CGGa--CGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 12997 0.67 0.810669
Target:  5'- --cUCGUcCCgcgcggcGcCCUGCGCGCCGGCc -3'
miRNA:   3'- gaaAGCGaGGa------C-GGACGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 103276 0.67 0.801739
Target:  5'- ----gGCUCC-GCCggcaGCaACGCCGGCGa -3'
miRNA:   3'- gaaagCGAGGaCGGa---CG-UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 102979 0.67 0.801739
Target:  5'- ----aGCUCC-GCCgcGCACGCCGuCGc -3'
miRNA:   3'- gaaagCGAGGaCGGa-CGUGCGGCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.