Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6680 | 3' | -56.8 | NC_001847.1 | + | 87539 | 0.71 | 0.571824 |
Target: 5'- uUUUCGCugggaUCCUGCgacCUGC-CGCCGGCc -3' miRNA: 3'- gAAAGCG-----AGGACG---GACGuGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 36572 | 0.71 | 0.582044 |
Target: 5'- ---cCGCgcgCCUaCCUGgACGCCGACGg -3' miRNA: 3'- gaaaGCGa--GGAcGGACgUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132409 | 0.71 | 0.582044 |
Target: 5'- --cUCGCUCCcGcCCUGCGCuCCGugGu -3' miRNA: 3'- gaaAGCGAGGaC-GGACGUGcGGCugU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 116963 | 0.71 | 0.582044 |
Target: 5'- ---gUGCUCCggcUGcCCUGCgACGCCGACc -3' miRNA: 3'- gaaaGCGAGG---AC-GGACG-UGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 29026 | 0.7 | 0.5923 |
Target: 5'- --aUCGCgCCcagaGCCgcGCGCGCCGGCAg -3' miRNA: 3'- gaaAGCGaGGa---CGGa-CGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 36811 | 0.7 | 0.602587 |
Target: 5'- ---cCGCUUCgugcGCCaccgGCGCGCCGACu -3' miRNA: 3'- gaaaGCGAGGa---CGGa---CGUGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 91344 | 0.7 | 0.612896 |
Target: 5'- --gUCGC-CCUcGaCCgGCGCGCCGGCGc -3' miRNA: 3'- gaaAGCGaGGA-C-GGaCGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132056 | 0.7 | 0.612896 |
Target: 5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3' miRNA: 3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 29243 | 0.7 | 0.612896 |
Target: 5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3' miRNA: 3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 86941 | 0.7 | 0.623219 |
Target: 5'- ---gCGCUCCUcgGCCcugGC-CGCCGGCGc -3' miRNA: 3'- gaaaGCGAGGA--CGGa--CGuGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 34619 | 0.7 | 0.623219 |
Target: 5'- ---gCGCcgaggaagUCCggcGCCUGCGCGCCGAg- -3' miRNA: 3'- gaaaGCG--------AGGa--CGGACGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 78657 | 0.7 | 0.633549 |
Target: 5'- --gUCGCgcgcGCCUGCGuCGCCGGCGu -3' miRNA: 3'- gaaAGCGaggaCGGACGU-GCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 61951 | 0.7 | 0.633549 |
Target: 5'- ---cCGCagCCUGCCcGCGCGCCGuGCc -3' miRNA: 3'- gaaaGCGa-GGACGGaCGUGCGGC-UGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 37717 | 0.7 | 0.643878 |
Target: 5'- ---gCGCUgCUGCUggGCGCGCCGGu- -3' miRNA: 3'- gaaaGCGAgGACGGa-CGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 116840 | 0.69 | 0.654198 |
Target: 5'- -aUUCGCcggCUgGCCgUGCACGCCGAa- -3' miRNA: 3'- gaAAGCGa--GGaCGG-ACGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 87254 | 0.69 | 0.658321 |
Target: 5'- ---cCGCgggaUUCUGCCgcuuucucgcggacgUGCGCGCCGACGg -3' miRNA: 3'- gaaaGCG----AGGACGG---------------ACGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 120234 | 0.69 | 0.6645 |
Target: 5'- --aUCGCggcgaggcagUCgGCCUGCGCGCgGACGg -3' miRNA: 3'- gaaAGCGa---------GGaCGGACGUGCGgCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 49511 | 0.69 | 0.6645 |
Target: 5'- ---aCGCgcgCCUGCgaGCaagcGCGCCGGCGc -3' miRNA: 3'- gaaaGCGa--GGACGgaCG----UGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 108754 | 0.69 | 0.6645 |
Target: 5'- ---gCGUUCCUGCCgcgcUGgGCGCCgGACGc -3' miRNA: 3'- gaaaGCGAGGACGG----ACgUGCGG-CUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 11592 | 0.69 | 0.6645 |
Target: 5'- --gUUGCUUCUGC--GCugGCCGGCGc -3' miRNA: 3'- gaaAGCGAGGACGgaCGugCGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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