Results 21 - 40 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6680 | 3' | -56.8 | NC_001847.1 | + | 30893 | 0.68 | 0.736347 |
Target: 5'- --gUCGC-CCgGCCgcagcccggugaggcGCGCGCCGGCGg -3' miRNA: 3'- gaaAGCGaGGaCGGa--------------CGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 31296 | 0.68 | 0.735359 |
Target: 5'- ---aCGCUCgUGCUgcugcgGCGCGCCG-CGg -3' miRNA: 3'- gaaaGCGAGgACGGa-----CGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 32643 | 0.74 | 0.400496 |
Target: 5'- ---gCGCUcugcCCUGCCUGCACGCCu--- -3' miRNA: 3'- gaaaGCGA----GGACGGACGUGCGGcugu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 34273 | 0.67 | 0.801739 |
Target: 5'- ---gCGCcCCUGCCgccgacccccgGCGgGCCGGCGc -3' miRNA: 3'- gaaaGCGaGGACGGa----------CGUgCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 34619 | 0.7 | 0.623219 |
Target: 5'- ---gCGCcgaggaagUCCggcGCCUGCGCGCCGAg- -3' miRNA: 3'- gaaaGCG--------AGGa--CGGACGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 36339 | 0.68 | 0.745192 |
Target: 5'- ----aGCUCgUGCC-GCGCGCCG-CGg -3' miRNA: 3'- gaaagCGAGgACGGaCGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 36572 | 0.71 | 0.582044 |
Target: 5'- ---cCGCgcgCCUaCCUGgACGCCGACGg -3' miRNA: 3'- gaaaGCGa--GGAcGGACgUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 36811 | 0.7 | 0.602587 |
Target: 5'- ---cCGCUUCgugcGCCaccgGCGCGCCGACu -3' miRNA: 3'- gaaaGCGAGGa---CGGa---CGUGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 37423 | 0.69 | 0.685015 |
Target: 5'- gCUUcCGCUUCUGCCcc--CGCCGACGa -3' miRNA: 3'- -GAAaGCGAGGACGGacguGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 37717 | 0.7 | 0.643878 |
Target: 5'- ---gCGCUgCUGCUggGCGCGCCGGu- -3' miRNA: 3'- gaaaGCGAgGACGGa-CGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 37970 | 0.68 | 0.71543 |
Target: 5'- --aUgGC-CC-GCgUGCGCGCCGGCAg -3' miRNA: 3'- gaaAgCGaGGaCGgACGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 41015 | 0.66 | 0.844656 |
Target: 5'- --gUCGUgccgUCCUGCaacggGCGCGCCG-CGg -3' miRNA: 3'- gaaAGCG----AGGACGga---CGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 41342 | 0.71 | 0.55152 |
Target: 5'- --cUCGCUCgCUgugaccgcacgcGCUUGCGCGCCGAgAg -3' miRNA: 3'- gaaAGCGAG-GA------------CGGACGUGCGGCUgU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 41616 | 0.66 | 0.844656 |
Target: 5'- -gUUCuGCUCCgccgugaugGCCgcgagcgGCGCGCCGGgGg -3' miRNA: 3'- gaAAG-CGAGGa--------CGGa------CGUGCGGCUgU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 41848 | 0.68 | 0.745192 |
Target: 5'- ---aCGCgcgCgCgGCCUGCGCGCCGcCGa -3' miRNA: 3'- gaaaGCGa--G-GaCGGACGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 42198 | 0.66 | 0.828025 |
Target: 5'- -cUUCGCagcggaCCU-CCUGCgauGCGCCGGCGc -3' miRNA: 3'- gaAAGCGa-----GGAcGGACG---UGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 43422 | 0.73 | 0.46356 |
Target: 5'- cCUcgCGCUgCUG-CUGCugGCCGGCGu -3' miRNA: 3'- -GAaaGCGAgGACgGACGugCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 43767 | 0.72 | 0.519521 |
Target: 5'- -cUUCGacugcaUCCUGCCggugcuggacgcGCGCGCCGGCGc -3' miRNA: 3'- gaAAGCg-----AGGACGGa-----------CGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 45179 | 0.71 | 0.561647 |
Target: 5'- ---cCGCUUCcGCC-GCGCGCUGGCAg -3' miRNA: 3'- gaaaGCGAGGaCGGaCGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 45970 | 0.68 | 0.71543 |
Target: 5'- cCUUUCaugaGCaUCUUGCC-GC-CGCCGACAa -3' miRNA: 3'- -GAAAG----CG-AGGACGGaCGuGCGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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