miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 30893 0.68 0.736347
Target:  5'- --gUCGC-CCgGCCgcagcccggugaggcGCGCGCCGGCGg -3'
miRNA:   3'- gaaAGCGaGGaCGGa--------------CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 31296 0.68 0.735359
Target:  5'- ---aCGCUCgUGCUgcugcgGCGCGCCG-CGg -3'
miRNA:   3'- gaaaGCGAGgACGGa-----CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 32643 0.74 0.400496
Target:  5'- ---gCGCUcugcCCUGCCUGCACGCCu--- -3'
miRNA:   3'- gaaaGCGA----GGACGGACGUGCGGcugu -5'
6680 3' -56.8 NC_001847.1 + 34273 0.67 0.801739
Target:  5'- ---gCGCcCCUGCCgccgacccccgGCGgGCCGGCGc -3'
miRNA:   3'- gaaaGCGaGGACGGa----------CGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 34619 0.7 0.623219
Target:  5'- ---gCGCcgaggaagUCCggcGCCUGCGCGCCGAg- -3'
miRNA:   3'- gaaaGCG--------AGGa--CGGACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 36339 0.68 0.745192
Target:  5'- ----aGCUCgUGCC-GCGCGCCG-CGg -3'
miRNA:   3'- gaaagCGAGgACGGaCGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 36572 0.71 0.582044
Target:  5'- ---cCGCgcgCCUaCCUGgACGCCGACGg -3'
miRNA:   3'- gaaaGCGa--GGAcGGACgUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 36811 0.7 0.602587
Target:  5'- ---cCGCUUCgugcGCCaccgGCGCGCCGACu -3'
miRNA:   3'- gaaaGCGAGGa---CGGa---CGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 37423 0.69 0.685015
Target:  5'- gCUUcCGCUUCUGCCcc--CGCCGACGa -3'
miRNA:   3'- -GAAaGCGAGGACGGacguGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 37717 0.7 0.643878
Target:  5'- ---gCGCUgCUGCUggGCGCGCCGGu- -3'
miRNA:   3'- gaaaGCGAgGACGGa-CGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 37970 0.68 0.71543
Target:  5'- --aUgGC-CC-GCgUGCGCGCCGGCAg -3'
miRNA:   3'- gaaAgCGaGGaCGgACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 41015 0.66 0.844656
Target:  5'- --gUCGUgccgUCCUGCaacggGCGCGCCG-CGg -3'
miRNA:   3'- gaaAGCG----AGGACGga---CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 41342 0.71 0.55152
Target:  5'- --cUCGCUCgCUgugaccgcacgcGCUUGCGCGCCGAgAg -3'
miRNA:   3'- gaaAGCGAG-GA------------CGGACGUGCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 41616 0.66 0.844656
Target:  5'- -gUUCuGCUCCgccgugaugGCCgcgagcgGCGCGCCGGgGg -3'
miRNA:   3'- gaAAG-CGAGGa--------CGGa------CGUGCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 41848 0.68 0.745192
Target:  5'- ---aCGCgcgCgCgGCCUGCGCGCCGcCGa -3'
miRNA:   3'- gaaaGCGa--G-GaCGGACGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 42198 0.66 0.828025
Target:  5'- -cUUCGCagcggaCCU-CCUGCgauGCGCCGGCGc -3'
miRNA:   3'- gaAAGCGa-----GGAcGGACG---UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 43422 0.73 0.46356
Target:  5'- cCUcgCGCUgCUG-CUGCugGCCGGCGu -3'
miRNA:   3'- -GAaaGCGAgGACgGACGugCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 43767 0.72 0.519521
Target:  5'- -cUUCGacugcaUCCUGCCggugcuggacgcGCGCGCCGGCGc -3'
miRNA:   3'- gaAAGCg-----AGGACGGa-----------CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 45179 0.71 0.561647
Target:  5'- ---cCGCUUCcGCC-GCGCGCUGGCAg -3'
miRNA:   3'- gaaaGCGAGGaCGGaCGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 45970 0.68 0.71543
Target:  5'- cCUUUCaugaGCaUCUUGCC-GC-CGCCGACAa -3'
miRNA:   3'- -GAAAG----CG-AGGACGGaCGuGCGGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.