miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 116840 0.69 0.654198
Target:  5'- -aUUCGCcggCUgGCCgUGCACGCCGAa- -3'
miRNA:   3'- gaAAGCGa--GGaCGG-ACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 116758 0.68 0.735359
Target:  5'- gCUUcugCGCggggCCUGCUggGUcuGCGCCGACGa -3'
miRNA:   3'- -GAAa--GCGa---GGACGGa-CG--UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 116508 0.71 0.54145
Target:  5'- ---gCGCUCgccgagcaccuCUGCCUGCgcuacgcgcGCGCCGACGc -3'
miRNA:   3'- gaaaGCGAG-----------GACGGACG---------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 115725 0.68 0.716433
Target:  5'- cCUUUggCGCUCCcgcuuUGCCUGCugcgucgccgcggaGCCGACGg -3'
miRNA:   3'- -GAAA--GCGAGG-----ACGGACGug------------CGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 114686 0.67 0.764545
Target:  5'- ----aGCcgCCgcgGCCUGCuggacgccuuccGCGCCGACAa -3'
miRNA:   3'- gaaagCGa-GGa--CGGACG------------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 114365 0.66 0.819434
Target:  5'- ---aUGCUgCaGCCccccucgcaucUGCGCGCCGACGa -3'
miRNA:   3'- gaaaGCGAgGaCGG-----------ACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 109697 0.66 0.836435
Target:  5'- ---gCGCUCg-GCCUGCA-GUCGGCGc -3'
miRNA:   3'- gaaaGCGAGgaCGGACGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 108754 0.69 0.6645
Target:  5'- ---gCGUUCCUGCCgcgcUGgGCGCCgGACGc -3'
miRNA:   3'- gaaaGCGAGGACGG----ACgUGCGG-CUGU- -5'
6680 3' -56.8 NC_001847.1 + 108702 0.67 0.800837
Target:  5'- ---cCGCcCCUGCCUcGCGCGCguuggucUGGCAg -3'
miRNA:   3'- gaaaGCGaGGACGGA-CGUGCG-------GCUGU- -5'
6680 3' -56.8 NC_001847.1 + 108234 0.67 0.774046
Target:  5'- ---cCGCUucuacgCCUGCCUGCAgGCCa--- -3'
miRNA:   3'- gaaaGCGA------GGACGGACGUgCGGcugu -5'
6680 3' -56.8 NC_001847.1 + 106042 0.66 0.8605
Target:  5'- --cUCGCgcgCCgcccgcGCCgUGCuCGCCGGCGg -3'
miRNA:   3'- gaaAGCGa--GGa-----CGG-ACGuGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 105874 0.67 0.792652
Target:  5'- ---gCGCUCCgggugcgccGCCaGCGCGuCCGGCGc -3'
miRNA:   3'- gaaaGCGAGGa--------CGGaCGUGC-GGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 103824 0.66 0.836435
Target:  5'- ---gCGCUCCaccagGCCgccgcccgcgGCGCGCCGcaGCAg -3'
miRNA:   3'- gaaaGCGAGGa----CGGa---------CGUGCGGC--UGU- -5'
6680 3' -56.8 NC_001847.1 + 103276 0.67 0.801739
Target:  5'- ----gGCUCC-GCCggcaGCaACGCCGGCGa -3'
miRNA:   3'- gaaagCGAGGaCGGa---CG-UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 102979 0.67 0.801739
Target:  5'- ----aGCUCC-GCCgcGCACGCCGuCGc -3'
miRNA:   3'- gaaagCGAGGaCGGa-CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 100470 0.66 0.844656
Target:  5'- ---gCGCUCCU-CCUGC-CGCUGcGCGg -3'
miRNA:   3'- gaaaGCGAGGAcGGACGuGCGGC-UGU- -5'
6680 3' -56.8 NC_001847.1 + 97480 0.66 0.828025
Target:  5'- ---gCGCUaagcCCgcggGCUUGCGCGCCGGa- -3'
miRNA:   3'- gaaaGCGA----GGa---CGGACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 95119 0.67 0.764545
Target:  5'- ---gCGCggaCgaGCCUGCAguCGCCGGCGc -3'
miRNA:   3'- gaaaGCGa--GgaCGGACGU--GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 94026 0.66 0.849494
Target:  5'- ---cCGCgCCUGCCgggaucgacccuaGUGCGCCGGCu -3'
miRNA:   3'- gaaaGCGaGGACGGa------------CGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 93873 0.73 0.46356
Target:  5'- ---gCGCUgCUGaCC-GCGCGCCGGCAa -3'
miRNA:   3'- gaaaGCGAgGAC-GGaCGUGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.