miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 134109 0.68 0.735359
Target:  5'- ---aCGCUCgUGCUgcugcgGCGCGCCG-CGg -3'
miRNA:   3'- gaaaGCGAGgACGGa-----CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 133199 0.68 0.745192
Target:  5'- --cUCGCUggaggagcUCUGCgCcGCGCGCCGGCu -3'
miRNA:   3'- gaaAGCGA--------GGACG-GaCGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 132409 0.71 0.582044
Target:  5'- --cUCGCUCCcGcCCUGCGCuCCGugGu -3'
miRNA:   3'- gaaAGCGAGGaC-GGACGUGcGGCugU- -5'
6680 3' -56.8 NC_001847.1 + 132283 0.66 0.85268
Target:  5'- ---cCGCgcgUCgGCCUGgGCGCUGGCGc -3'
miRNA:   3'- gaaaGCGa--GGaCGGACgUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 132171 0.66 0.85268
Target:  5'- ---gCGCggccCCggcgGCgCUGCGCGCCGAg- -3'
miRNA:   3'- gaaaGCGa---GGa---CG-GACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 132147 0.66 0.85268
Target:  5'- ---gCGCUgCUGCC-GCGCagggugggGCCGGCGa -3'
miRNA:   3'- gaaaGCGAgGACGGaCGUG--------CGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 132056 0.7 0.612896
Target:  5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3'
miRNA:   3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5'
6680 3' -56.8 NC_001847.1 + 131344 0.68 0.725435
Target:  5'- ---aCGCcCCgUGCCgGCACGCCGuCGu -3'
miRNA:   3'- gaaaGCGaGG-ACGGaCGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 130911 0.77 0.285206
Target:  5'- ----aGCUCgUGCCggcGCGCGCCGGCAc -3'
miRNA:   3'- gaaagCGAGgACGGa--CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 128630 0.67 0.774046
Target:  5'- ---gUGUUCCagGCUgaGCGCGCCGGCGa -3'
miRNA:   3'- gaaaGCGAGGa-CGGa-CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 127964 0.67 0.801739
Target:  5'- ---gCGCUCCaaauCCUGUACGCCaccGACGg -3'
miRNA:   3'- gaaaGCGAGGac--GGACGUGCGG---CUGU- -5'
6680 3' -56.8 NC_001847.1 + 124395 0.69 0.68297
Target:  5'- ----aGCUCUgccagaaaaugcGCCUGUACGCCGGCc -3'
miRNA:   3'- gaaagCGAGGa-----------CGGACGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 123779 0.66 0.85268
Target:  5'- --cUUGCauuggCCUcgggGCCUGCGCGgCGGCGg -3'
miRNA:   3'- gaaAGCGa----GGA----CGGACGUGCgGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 122443 0.73 0.454228
Target:  5'- ----gGCaccggCCUGCCUGCAcccCGCCGACGc -3'
miRNA:   3'- gaaagCGa----GGACGGACGU---GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 121884 0.69 0.674775
Target:  5'- ---aCGCggCCUGCCUGCGaacCGCCcGCGu -3'
miRNA:   3'- gaaaGCGa-GGACGGACGU---GCGGcUGU- -5'
6680 3' -56.8 NC_001847.1 + 120465 1.08 0.0022
Target:  5'- cCUUUCGCUCCUGCCUGCACGCCGACAc -3'
miRNA:   3'- -GAAAGCGAGGACGGACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 120433 0.75 0.375193
Target:  5'- -gUUCGcCUCCUGCCcGCGCGUCG-CGa -3'
miRNA:   3'- gaAAGC-GAGGACGGaCGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 120234 0.69 0.6645
Target:  5'- --aUCGCggcgaggcagUCgGCCUGCGCGCgGACGg -3'
miRNA:   3'- gaaAGCGa---------GGaCGGACGUGCGgCUGU- -5'
6680 3' -56.8 NC_001847.1 + 117019 0.72 0.499896
Target:  5'- cCUgggCGCUCCUGUCUGCccggcgggggcuCGCCGAgGa -3'
miRNA:   3'- -GAaa-GCGAGGACGGACGu-----------GCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 116963 0.71 0.582044
Target:  5'- ---gUGCUCCggcUGcCCUGCgACGCCGACc -3'
miRNA:   3'- gaaaGCGAGG---AC-GGACG-UGCGGCUGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.