Results 1 - 20 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6680 | 3' | -56.8 | NC_001847.1 | + | 134109 | 0.68 | 0.735359 |
Target: 5'- ---aCGCUCgUGCUgcugcgGCGCGCCG-CGg -3' miRNA: 3'- gaaaGCGAGgACGGa-----CGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 133199 | 0.68 | 0.745192 |
Target: 5'- --cUCGCUggaggagcUCUGCgCcGCGCGCCGGCu -3' miRNA: 3'- gaaAGCGA--------GGACG-GaCGUGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132409 | 0.71 | 0.582044 |
Target: 5'- --cUCGCUCCcGcCCUGCGCuCCGugGu -3' miRNA: 3'- gaaAGCGAGGaC-GGACGUGcGGCugU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132283 | 0.66 | 0.85268 |
Target: 5'- ---cCGCgcgUCgGCCUGgGCGCUGGCGc -3' miRNA: 3'- gaaaGCGa--GGaCGGACgUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132171 | 0.66 | 0.85268 |
Target: 5'- ---gCGCggccCCggcgGCgCUGCGCGCCGAg- -3' miRNA: 3'- gaaaGCGa---GGa---CG-GACGUGCGGCUgu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132147 | 0.66 | 0.85268 |
Target: 5'- ---gCGCUgCUGCC-GCGCagggugggGCCGGCGa -3' miRNA: 3'- gaaaGCGAgGACGGaCGUG--------CGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 132056 | 0.7 | 0.612896 |
Target: 5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3' miRNA: 3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 131344 | 0.68 | 0.725435 |
Target: 5'- ---aCGCcCCgUGCCgGCACGCCGuCGu -3' miRNA: 3'- gaaaGCGaGG-ACGGaCGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 130911 | 0.77 | 0.285206 |
Target: 5'- ----aGCUCgUGCCggcGCGCGCCGGCAc -3' miRNA: 3'- gaaagCGAGgACGGa--CGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 128630 | 0.67 | 0.774046 |
Target: 5'- ---gUGUUCCagGCUgaGCGCGCCGGCGa -3' miRNA: 3'- gaaaGCGAGGa-CGGa-CGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 127964 | 0.67 | 0.801739 |
Target: 5'- ---gCGCUCCaaauCCUGUACGCCaccGACGg -3' miRNA: 3'- gaaaGCGAGGac--GGACGUGCGG---CUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 124395 | 0.69 | 0.68297 |
Target: 5'- ----aGCUCUgccagaaaaugcGCCUGUACGCCGGCc -3' miRNA: 3'- gaaagCGAGGa-----------CGGACGUGCGGCUGu -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 123779 | 0.66 | 0.85268 |
Target: 5'- --cUUGCauuggCCUcgggGCCUGCGCGgCGGCGg -3' miRNA: 3'- gaaAGCGa----GGA----CGGACGUGCgGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 122443 | 0.73 | 0.454228 |
Target: 5'- ----gGCaccggCCUGCCUGCAcccCGCCGACGc -3' miRNA: 3'- gaaagCGa----GGACGGACGU---GCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 121884 | 0.69 | 0.674775 |
Target: 5'- ---aCGCggCCUGCCUGCGaacCGCCcGCGu -3' miRNA: 3'- gaaaGCGa-GGACGGACGU---GCGGcUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 120465 | 1.08 | 0.0022 |
Target: 5'- cCUUUCGCUCCUGCCUGCACGCCGACAc -3' miRNA: 3'- -GAAAGCGAGGACGGACGUGCGGCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 120433 | 0.75 | 0.375193 |
Target: 5'- -gUUCGcCUCCUGCCcGCGCGUCG-CGa -3' miRNA: 3'- gaAAGC-GAGGACGGaCGUGCGGCuGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 120234 | 0.69 | 0.6645 |
Target: 5'- --aUCGCggcgaggcagUCgGCCUGCGCGCgGACGg -3' miRNA: 3'- gaaAGCGa---------GGaCGGACGUGCGgCUGU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 117019 | 0.72 | 0.499896 |
Target: 5'- cCUgggCGCUCCUGUCUGCccggcgggggcuCGCCGAgGa -3' miRNA: 3'- -GAaa-GCGAGGACGGACGu-----------GCGGCUgU- -5' |
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6680 | 3' | -56.8 | NC_001847.1 | + | 116963 | 0.71 | 0.582044 |
Target: 5'- ---gUGCUCCggcUGcCCUGCgACGCCGACc -3' miRNA: 3'- gaaaGCGAGG---AC-GGACG-UGCGGCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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