miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 103824 0.66 0.836435
Target:  5'- ---gCGCUCCaccagGCCgccgcccgcgGCGCGCCGcaGCAg -3'
miRNA:   3'- gaaaGCGAGGa----CGGa---------CGUGCGGC--UGU- -5'
6680 3' -56.8 NC_001847.1 + 97480 0.66 0.828025
Target:  5'- ---gCGCUaagcCCgcggGCUUGCGCGCCGGa- -3'
miRNA:   3'- gaaaGCGA----GGa---CGGACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 13138 0.66 0.828025
Target:  5'- ---cCGCgccgCCUGCC-GCG-GCCGGCGg -3'
miRNA:   3'- gaaaGCGa---GGACGGaCGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 92972 0.66 0.819434
Target:  5'- --cUCGCauUCC-GCCaGCAccCGCCGGCAa -3'
miRNA:   3'- gaaAGCG--AGGaCGGaCGU--GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 3229 0.66 0.8605
Target:  5'- --cUCGCgcgCCgcccgcGCCgUGCuCGCCGGCGg -3'
miRNA:   3'- gaaAGCGa--GGa-----CGG-ACGuGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 132283 0.66 0.85268
Target:  5'- ---cCGCgcgUCgGCCUGgGCGCUGGCGc -3'
miRNA:   3'- gaaaGCGa--GGaCGGACgUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 41616 0.66 0.844656
Target:  5'- -gUUCuGCUCCgccgugaugGCCgcgagcgGCGCGCCGGgGg -3'
miRNA:   3'- gaAAG-CGAGGa--------CGGa------CGUGCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 106042 0.66 0.8605
Target:  5'- --cUCGCgcgCCgcccgcGCCgUGCuCGCCGGCGg -3'
miRNA:   3'- gaaAGCGa--GGa-----CGG-ACGuGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 85575 0.66 0.85268
Target:  5'- --gUCGuCUCaacggcGCCgucgacggGCGCGCCGGCAa -3'
miRNA:   3'- gaaAGC-GAGga----CGGa-------CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 89143 0.66 0.859728
Target:  5'- ---gCGCUCgUGCCcgucaacuuugacUGCGucguCGCCGACGc -3'
miRNA:   3'- gaaaGCGAGgACGG-------------ACGU----GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 83623 0.66 0.8605
Target:  5'- ---cCGCcCCcGCCUGCcgGCGCCG-CAc -3'
miRNA:   3'- gaaaGCGaGGaCGGACG--UGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 82596 0.66 0.844656
Target:  5'- ---gCGCUCgCggcggcGCCUGUGCGCCGcGCGc -3'
miRNA:   3'- gaaaGCGAG-Ga-----CGGACGUGCGGC-UGU- -5'
6680 3' -56.8 NC_001847.1 + 15293 0.66 0.85268
Target:  5'- ---aCGcCUgCUGgCUGCGCGCgGGCGu -3'
miRNA:   3'- gaaaGC-GAgGACgGACGUGCGgCUGU- -5'
6680 3' -56.8 NC_001847.1 + 89735 0.66 0.858176
Target:  5'- -cUUCGCUCUUGaCCUuuuuuggcggGCugcggcacgugcacGCGCCGGCGu -3'
miRNA:   3'- gaAAGCGAGGAC-GGA----------CG--------------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 64293 0.66 0.85268
Target:  5'- --cUCGCUCgCUGCauuUGCGCcCCGAUc -3'
miRNA:   3'- gaaAGCGAG-GACGg--ACGUGcGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 123779 0.66 0.85268
Target:  5'- --cUUGCauuggCCUcgggGCCUGCGCGgCGGCGg -3'
miRNA:   3'- gaaAGCGa----GGA----CGGACGUGCgGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 132171 0.66 0.85268
Target:  5'- ---gCGCggccCCggcgGCgCUGCGCGCCGAg- -3'
miRNA:   3'- gaaaGCGa---GGa---CG-GACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 81709 0.66 0.8605
Target:  5'- ---gCGCUgCgGCacgcGCGCGCCGACGc -3'
miRNA:   3'- gaaaGCGAgGaCGga--CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 41015 0.66 0.844656
Target:  5'- --gUCGUgccgUCCUGCaacggGCGCGCCG-CGg -3'
miRNA:   3'- gaaAGCG----AGGACGga---CGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 78420 0.66 0.828025
Target:  5'- ---gCGCUgCUGgCgcGCGCGCUGACGg -3'
miRNA:   3'- gaaaGCGAgGACgGa-CGUGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.