miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 1011 0.66 0.836435
Target:  5'- ---gCGCUCCaccagGCCgccgcccgcgGCGCGCCGcaGCAg -3'
miRNA:   3'- gaaaGCGAGGa----CGGa---------CGUGCGGC--UGU- -5'
6680 3' -56.8 NC_001847.1 + 3061 0.67 0.792652
Target:  5'- ---gCGCUCCgggugcgccGCCaGCGCGuCCGGCGc -3'
miRNA:   3'- gaaaGCGAGGa--------CGGaCGUGC-GGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 3229 0.66 0.8605
Target:  5'- --cUCGCgcgCCgcccgcGCCgUGCuCGCCGGCGg -3'
miRNA:   3'- gaaAGCGa--GGa-----CGG-ACGuGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 4227 0.67 0.783419
Target:  5'- ---gCGCgg-UGCCggcGCGCGCCGGCAc -3'
miRNA:   3'- gaaaGCGaggACGGa--CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 5889 0.67 0.800837
Target:  5'- ---cCGCcCCUGCCUcGCGCGCguuggucUGGCAg -3'
miRNA:   3'- gaaaGCGaGGACGGA-CGUGCG-------GCUGU- -5'
6680 3' -56.8 NC_001847.1 + 7367 0.73 0.472992
Target:  5'- ---gCGCUgCUGCCgGCGcCGCUGACAg -3'
miRNA:   3'- gaaaGCGAgGACGGaCGU-GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 7802 0.67 0.764545
Target:  5'- ---cCGCcCCUGCCgcgGCA-GCCGGCc -3'
miRNA:   3'- gaaaGCGaGGACGGa--CGUgCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 11592 0.69 0.6645
Target:  5'- --gUUGCUUCUGC--GCugGCCGGCGc -3'
miRNA:   3'- gaaAGCGAGGACGgaCGugCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 12679 0.69 0.674775
Target:  5'- ---aCGCgaagCUGCaCUGCGCGUCGGCGg -3'
miRNA:   3'- gaaaGCGag--GACG-GACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 12997 0.67 0.810669
Target:  5'- --cUCGUcCCgcgcggcGcCCUGCGCGCCGGCc -3'
miRNA:   3'- gaaAGCGaGGa------C-GGACGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 13138 0.66 0.828025
Target:  5'- ---cCGCgccgCCUGCC-GCG-GCCGGCGg -3'
miRNA:   3'- gaaaGCGa---GGACGGaCGUgCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 14534 0.67 0.791736
Target:  5'- ---gCGCUCgCUGCCcGCGgugccgccguagaUGCCGACGc -3'
miRNA:   3'- gaaaGCGAG-GACGGaCGU-------------GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 15293 0.66 0.85268
Target:  5'- ---aCGcCUgCUGgCUGCGCGCgGGCGu -3'
miRNA:   3'- gaaaGC-GAgGACgGACGUGCGgCUGU- -5'
6680 3' -56.8 NC_001847.1 + 20069 0.68 0.745192
Target:  5'- ---gCGCUCgCUGCCUGCgcucggggcgaGCGCCaGCu -3'
miRNA:   3'- gaaaGCGAG-GACGGACG-----------UGCGGcUGu -5'
6680 3' -56.8 NC_001847.1 + 26788 0.69 0.685015
Target:  5'- ---gCGC-CCU-CCUGCGCGCCG-CAg -3'
miRNA:   3'- gaaaGCGaGGAcGGACGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 27469 0.68 0.71543
Target:  5'- ---gCGCcgUCaCUGaCUGCACGCCGGCu -3'
miRNA:   3'- gaaaGCG--AG-GACgGACGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 29026 0.7 0.5923
Target:  5'- --aUCGCgCCcagaGCCgcGCGCGCCGGCAg -3'
miRNA:   3'- gaaAGCGaGGa---CGGa-CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 29243 0.7 0.612896
Target:  5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3'
miRNA:   3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5'
6680 3' -56.8 NC_001847.1 + 29358 0.66 0.85268
Target:  5'- ---gCGCggccCCggcgGCgCUGCGCGCCGAg- -3'
miRNA:   3'- gaaaGCGa---GGa---CG-GACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 29470 0.66 0.85268
Target:  5'- ---cCGCgcgUCgGCCUGgGCGCUGGCGc -3'
miRNA:   3'- gaaaGCGa--GGaCGGACgUGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.