miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 120433 0.75 0.375193
Target:  5'- -gUUCGcCUCCUGCCcGCGCGUCG-CGa -3'
miRNA:   3'- gaAAGC-GAGGACGGaCGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 49511 0.69 0.6645
Target:  5'- ---aCGCgcgCCUGCgaGCaagcGCGCCGGCGc -3'
miRNA:   3'- gaaaGCGa--GGACGgaCG----UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 87254 0.69 0.658321
Target:  5'- ---cCGCgggaUUCUGCCgcuuucucgcggacgUGCGCGCCGACGg -3'
miRNA:   3'- gaaaGCG----AGGACGG---------------ACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 116840 0.69 0.654198
Target:  5'- -aUUCGCcggCUgGCCgUGCACGCCGAa- -3'
miRNA:   3'- gaAAGCGa--GGaCGG-ACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 37717 0.7 0.643878
Target:  5'- ---gCGCUgCUGCUggGCGCGCCGGu- -3'
miRNA:   3'- gaaaGCGAgGACGGa-CGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 78657 0.7 0.633549
Target:  5'- --gUCGCgcgcGCCUGCGuCGCCGGCGu -3'
miRNA:   3'- gaaAGCGaggaCGGACGU-GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 34619 0.7 0.623219
Target:  5'- ---gCGCcgaggaagUCCggcGCCUGCGCGCCGAg- -3'
miRNA:   3'- gaaaGCG--------AGGa--CGGACGUGCGGCUgu -5'
6680 3' -56.8 NC_001847.1 + 132056 0.7 0.612896
Target:  5'- ---cUGCcggCCgcgGCCUGCGCGCCgGACGc -3'
miRNA:   3'- gaaaGCGa--GGa--CGGACGUGCGG-CUGU- -5'
6680 3' -56.8 NC_001847.1 + 36811 0.7 0.602587
Target:  5'- ---cCGCUUCgugcGCCaccgGCGCGCCGACu -3'
miRNA:   3'- gaaaGCGAGGa---CGGa---CGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 29026 0.7 0.5923
Target:  5'- --aUCGCgCCcagaGCCgcGCGCGCCGGCAg -3'
miRNA:   3'- gaaAGCGaGGa---CGGa-CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 36572 0.71 0.582044
Target:  5'- ---cCGCgcgCCUaCCUGgACGCCGACGg -3'
miRNA:   3'- gaaaGCGa--GGAcGGACgUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 116963 0.71 0.582044
Target:  5'- ---gUGCUCCggcUGcCCUGCgACGCCGACc -3'
miRNA:   3'- gaaaGCGAGG---AC-GGACG-UGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 41342 0.71 0.55152
Target:  5'- --cUCGCUCgCUgugaccgcacgcGCUUGCGCGCCGAgAg -3'
miRNA:   3'- gaaAGCGAG-GA------------CGGACGUGCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 52264 0.72 0.531441
Target:  5'- -cUUCGUgcucgCgUGCCcGCGCGCCGGCu -3'
miRNA:   3'- gaAAGCGa----GgACGGaCGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 43767 0.72 0.519521
Target:  5'- -cUUCGacugcaUCCUGCCggugcuggacgcGCGCGCCGGCGc -3'
miRNA:   3'- gaAAGCg-----AGGACGGa-----------CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 74703 0.72 0.511633
Target:  5'- ---gCGCUUUUGCCUGUacgggGCGCUGGCGg -3'
miRNA:   3'- gaaaGCGAGGACGGACG-----UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 7367 0.73 0.472992
Target:  5'- ---gCGCUgCUGCCgGCGcCGCUGACAg -3'
miRNA:   3'- gaaaGCGAgGACGGaCGU-GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 43422 0.73 0.46356
Target:  5'- cCUcgCGCUgCUG-CUGCugGCCGGCGu -3'
miRNA:   3'- -GAaaGCGAgGACgGACGugCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 122443 0.73 0.454228
Target:  5'- ----gGCaccggCCUGCCUGCAcccCGCCGACGc -3'
miRNA:   3'- gaaagCGa----GGACGGACGU---GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 120465 1.08 0.0022
Target:  5'- cCUUUCGCUCCUGCCUGCACGCCGACAc -3'
miRNA:   3'- -GAAAGCGAGGACGGACGUGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.