miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 3' -56.8 NC_001847.1 + 120465 1.08 0.0022
Target:  5'- cCUUUCGCUCCUGCCUGCACGCCGACAc -3'
miRNA:   3'- -GAAAGCGAGGACGGACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 86445 0.79 0.218492
Target:  5'- --aUCGCgccgCgCUGCCUGgACGCCGACGg -3'
miRNA:   3'- gaaAGCGa---G-GACGGACgUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 130911 0.77 0.285206
Target:  5'- ----aGCUCgUGCCggcGCGCGCCGGCAc -3'
miRNA:   3'- gaaagCGAGgACGGa--CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 120433 0.75 0.375193
Target:  5'- -gUUCGcCUCCUGCCcGCGCGUCG-CGa -3'
miRNA:   3'- gaAAGC-GAGGACGGaCGUGCGGCuGU- -5'
6680 3' -56.8 NC_001847.1 + 32643 0.74 0.400496
Target:  5'- ---gCGCUcugcCCUGCCUGCACGCCu--- -3'
miRNA:   3'- gaaaGCGA----GGACGGACGUGCGGcugu -5'
6680 3' -56.8 NC_001847.1 + 50419 0.74 0.409169
Target:  5'- ---gCGCgCCUGCCUGCACcaCCGGCGc -3'
miRNA:   3'- gaaaGCGaGGACGGACGUGc-GGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 122443 0.73 0.454228
Target:  5'- ----gGCaccggCCUGCCUGCAcccCGCCGACGc -3'
miRNA:   3'- gaaagCGa----GGACGGACGU---GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 43422 0.73 0.46356
Target:  5'- cCUcgCGCUgCUG-CUGCugGCCGGCGu -3'
miRNA:   3'- -GAaaGCGAgGACgGACGugCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 93873 0.73 0.46356
Target:  5'- ---gCGCUgCUGaCC-GCGCGCCGGCAa -3'
miRNA:   3'- gaaaGCGAgGAC-GGaCGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 7367 0.73 0.472992
Target:  5'- ---gCGCUgCUGCCgGCGcCGCUGACAg -3'
miRNA:   3'- gaaaGCGAgGACGGaCGU-GCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 49809 0.73 0.472992
Target:  5'- ---gCGCUgCUGCUggGCGCGCUGGCGg -3'
miRNA:   3'- gaaaGCGAgGACGGa-CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 117019 0.72 0.499896
Target:  5'- cCUgggCGCUCCUGUCUGCccggcgggggcuCGCCGAgGa -3'
miRNA:   3'- -GAaa-GCGAGGACGGACGu-----------GCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 74703 0.72 0.511633
Target:  5'- ---gCGCUUUUGCCUGUacgggGCGCUGGCGg -3'
miRNA:   3'- gaaaGCGAGGACGGACG-----UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 88284 0.72 0.511633
Target:  5'- ---gCGCUUC-GCCUGCugGgCCGACGc -3'
miRNA:   3'- gaaaGCGAGGaCGGACGugC-GGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 74038 0.72 0.518533
Target:  5'- ---gCGCcgCCUGCUguggaacggcaacgUGUACGCCGACAa -3'
miRNA:   3'- gaaaGCGa-GGACGG--------------ACGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 43767 0.72 0.519521
Target:  5'- -cUUCGacugcaUCCUGCCggugcuggacgcGCGCGCCGGCGc -3'
miRNA:   3'- gaAAGCg-----AGGACGGa-----------CGUGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 52264 0.72 0.531441
Target:  5'- -cUUCGUgcucgCgUGCCcGCGCGCCGGCu -3'
miRNA:   3'- gaAAGCGa----GgACGGaCGUGCGGCUGu -5'
6680 3' -56.8 NC_001847.1 + 116508 0.71 0.54145
Target:  5'- ---gCGCUCgccgagcaccuCUGCCUGCgcuacgcgcGCGCCGACGc -3'
miRNA:   3'- gaaaGCGAG-----------GACGGACG---------UGCGGCUGU- -5'
6680 3' -56.8 NC_001847.1 + 41342 0.71 0.55152
Target:  5'- --cUCGCUCgCUgugaccgcacgcGCUUGCGCGCCGAgAg -3'
miRNA:   3'- gaaAGCGAG-GA------------CGGACGUGCGGCUgU- -5'
6680 3' -56.8 NC_001847.1 + 45179 0.71 0.561647
Target:  5'- ---cCGCUUCcGCC-GCGCGCUGGCAg -3'
miRNA:   3'- gaaaGCGAGGaCGGaCGUGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.