miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 21731 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 34790 0.66 0.625527
Target:  5'- cGGCGC-GcGGCUacgacCCgCGGCCGcuGGCGc -3'
miRNA:   3'- aCCGUGaC-CCGA-----GG-GCCGGUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 129322 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 26509 0.66 0.625527
Target:  5'- gGGCcuGCcGGGCgcggGGCCGGGGGCGu -3'
miRNA:   3'- aCCG--UGaCCCGagggCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 96460 0.66 0.625527
Target:  5'- aGGCGCUGcggagaccaGGCUUgCGGgCGGcGGGCGu -3'
miRNA:   3'- aCCGUGAC---------CCGAGgGCCgGUU-UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 93596 0.66 0.625527
Target:  5'- cGGCGCUGGaGaagaUCaaGGCCcgcGGCGg -3'
miRNA:   3'- aCCGUGACC-Cg---AGggCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 124544 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 76401 0.66 0.625527
Target:  5'- gGGCGCcGGGggCCgCGGC-GGGGGCa -3'
miRNA:   3'- aCCGUGaCCCgaGG-GCCGgUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 12489 0.66 0.624526
Target:  5'- gUGGCgGCggGGGCggccaagaaCCCgGGCCAgacgacgAAGGCGa -3'
miRNA:   3'- -ACCG-UGa-CCCGa--------GGG-CCGGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 69261 0.66 0.619519
Target:  5'- gUGGCGCaUGGGCggcccccacgucagcUCgCCGcGCagGAAGGCGu -3'
miRNA:   3'- -ACCGUG-ACCCG---------------AG-GGC-CGg-UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 50524 0.66 0.615514
Target:  5'- cGGCAU--GGC-CCCGcUCGAAGGCGa -3'
miRNA:   3'- aCCGUGacCCGaGGGCcGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 99804 0.66 0.615514
Target:  5'- gUGGUGC-GGGgUCggagCGGCCGGGGGCc -3'
miRNA:   3'- -ACCGUGaCCCgAGg---GCCGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 90745 0.66 0.615514
Target:  5'- cGGCGCguggccGGGC-CCCGGgagcgggagcgcCCuuGAGGCGc -3'
miRNA:   3'- aCCGUGa-----CCCGaGGGCC------------GGu-UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 48839 0.66 0.615514
Target:  5'- -cGCGCggGGGCgCCuCGGCCGcgcGGCGc -3'
miRNA:   3'- acCGUGa-CCCGaGG-GCCGGUuu-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 15544 0.66 0.615514
Target:  5'- cUGGCGCcGGuGCgcgCgCGGCCGucGGGCc -3'
miRNA:   3'- -ACCGUGaCC-CGa--GgGCCGGUu-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 100598 0.66 0.615514
Target:  5'- cGGC-CUGuGGCcccaagcgCCCGGCgGgcGGCGc -3'
miRNA:   3'- aCCGuGAC-CCGa-------GGGCCGgUuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 3088 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 105901 0.66 0.615514
Target:  5'- cGGCGCgcaGGC-CgCGGCCGGcAGGCc -3'
miRNA:   3'- aCCGUGac-CCGaGgGCCGGUU-UCCGc -5'
6682 3' -61.7 NC_001847.1 + 81062 0.66 0.615514
Target:  5'- gGGCG-UGGGCggggCCUGGCUGGAcGGgGa -3'
miRNA:   3'- aCCGUgACCCGa---GGGCCGGUUU-CCgC- -5'
6682 3' -61.7 NC_001847.1 + 104534 0.66 0.615514
Target:  5'- cGGCGCUGcgcGGCggCCCcggGGCCGcuacgcGGCGg -3'
miRNA:   3'- aCCGUGAC---CCGa-GGG---CCGGUuu----CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.